Associate Professor Andrew Geering
Principal Research Fellow
Centre for Horticultural Science
+61 7 344 32459
Publications
Book Chapters
Geering, Andrew D.W. (2021). Badnaviruses (Caulimoviridae). Encyclopedia of Virology. (pp. 158-168) Amsterdam, Netherlands: Academic Press. doi: 10.1016/B978-0-12-814515-9.00147-8
Geering, Andrew D. W. (2017). Geographical distribution of viroids in Oceania. Viroids and satellites. (pp. 497-506) edited by Ahmed Hadidi, Ricardo Flores, John W. Randles and Peter Palukaitis. London, United Kingdom: Academic Press. doi: 10.1016/B978-0-12-801498-1.00046-2
Kuhn, David N., Geering, Andrew D. W. and Dixon, Jonathan (2017). Avocado Sunblotch Viroid. Viroids and Satellites. (pp. 297-305) edited by Hadidi, A., Flores, R., Randles, J. W. and Palukaitis, P.. London, United Kingdom: Academic Press. doi: 10.1016/B978-0-12-801498-1.00028-0
Geering, Andrew D. W. (2012). Molecular Markers for Plant Biosecurity. Molecular Markers in Plants. (pp. 99-117) edited by Robert J. Henry. Hoboken NJ, United States: Blackwell Publishing Ltd.. doi: 10.1002/9781118473023.ch7
Teycheney, Pierre-Yves and Geering, Andrew D.W. (2011). Endogenous viral sequences in plant genomes. Recent Advances in Plant Virology. (pp. 343-362) edited by Carole Caranta, Miguel A. Aranda, Mark Tepfer and Juan José Lopéz-Moya. Norfolk, United Kingdom: Caister Academic Press.
Geering, Andrew D. W. (2007). Evolutionary history and taxonomy. Shorebirds of Australia. (pp. 1-7) edited by Andrew D. W. Geering, Lindsay Agnew and Sandra Harding. Victoria, Australia: CSIRO Pubishing.
Harding, Sandra B., Wilson, Jim R. and Geering, Andrew D. W. (2007). Threats to shorebirds and conservation actions. Shorebirds of Australia. (pp. 197-213) edited by Andrew D. W. Geering, Lindsay Agnew and Sandra Harding. Victoria, Australia: CSIRO Pubishing.
Geering, Andrew, Agnew, Lindsay and Harding, Sandra (2007). Preface. Shorebirds of Australia. (pp. VII-IX) edited by Andrew D.W. Geering, Lindsay Agnew and Sandra Harding. Collingwood, VIC, Australia: CSIRO Publishing.
Thomas, J. E., Geering, A. D. W., Dahal, G., Lockhart, B. E. L. and Thottappilly, G. (2003). Banana and plantain. Virus and virus-like diseases of major crops in developing countries. (pp. 477-496) edited by Loebenstein, Gad and Thottappilly, George . Dordrecht ; London: Kluwer Academic. doi: 10.1007/978-94-007-0791-7
Journal Articles
Vassilieff, Héléna, Geering, Andrew D. W., Choisne, Nathalie, Teycheney, Pierre-Yves and Maumus, Florian (2023). Endogenous Caulimovirids: fossils, zombies, and living in plant genomes. Biomolecules, 13 (7) 1069. doi: 10.3390/biom13071069
Zakeel, Mohamed C. M., Geering, Andrew D. W. and Akinsanmi, Olufemi A. (2023). A fungal pathogen is unlikely to be the cause of abnormal vertical growth syndrome in macadamia. Plant Pathology, 72 (4), 731-741. doi: 10.1111/ppa.13689
Chambers, Grant A., Geering, Andrew D. W., Holford, Paul, Kehoe, Monica A., Vidalakis, Georgios and Donovan, Nerida J. (2023). A reverse transcription loop-mediated isothermal amplification assay for the detection of citrus exocortis viroid in Australian citrus. Australasian Plant Pathology, 52 (2), 121-132. doi: 10.1007/s13313-023-00903-1
Geering, Andrew D. W. (2023). The discovery of tomato spotted wilt virus. Historical Records of Australian Science. doi: 10.1071/hr23015
Pretorius, Lara-Simone and Geering, Andrew D. W. (2023). Extreme resilience of avocado sunblotch viroid RNA in sampled avocado leaves and fruit. Australasian Plant Pathology, 52 (1), 1-4. doi: 10.1007/s13313-022-00898-1
Vassilieff, Héléna, Haddad, Sana, Jamilloux, Véronique, Choisne, Nathalie, Sharma, Vikas, Giraud, Delphine, Wan, Mariène, Serfraz, Saad, Geering, Andrew D. W., Teycheney, Pierre-Yves and Maumus, Florian (2022). CAULIFINDER: a pipeline for the automated detection and annotation of caulimovirid endogenous viral elements in plant genomes. Mobile DNA, 13 (1) 31, 1-12. doi: 10.1186/s13100-022-00288-w
Chittarath, Khonesavanh, Crew, Kathleen S., Geering, Andrew D. W., Rungsawang, Wasana, Kong, Gary, Pongsapich, Preyapan and Thomas, John E. (2022). Presence and distribution of banana bunchy top virus in Laos. Australasian Plant Disease Notes, 17 (1) 36. doi: 10.1007/s13314-022-00482-y
Larrea-Sarmiento, Adriana, Geering, Andrew D. W., Olmedo-Velarde, Alejandro, Wang, Xupeng, Borth, Wayne, Matsumoto, Tracie K., Suzuki, Jon Y., Wall, Marisa M., Melzer, Michael, Moyle, Richard, Sharman, Murray, Hu, John and Thomas, John E. (2022). Genome sequence of pineapple secovirus B, a second sadwavirus reported infecting Ananas comosus. Archives of Virology, 167 (12), 1-4. doi: 10.1007/s00705-022-05590-9
Geering, Andrew D. W., McTaggart, Alistair R. and Teycheney, Pierre-Yves (2022). Untangling the taxonomy of dahlia mosaic virus. Archives of Virology, 167 (11), 2325-2329. doi: 10.1007/s00705-022-05567-8
Nurulita, Sari, Geering, Andrew D. W., Crew, Kathleen S., Harper, Stephen M. and Thomas, John E. (2022). Detection of two poleroviruses infecting garlic (Allium sativum) in Australia. Australasian Plant Pathology, 51 (4), 461-465. doi: 10.1007/s13313-022-00870-z
Tran, Nga T., Teo, Ai Chin, Crew, Kathleen S., Thomas, John E., Campbell, Paul R. and Geering, Andrew D. W. (2022). Bermuda grass latent virus in Australia: genome sequence, sequence variation, and new hosts. Archives of Virology, 167 (5), 1317-1323. doi: 10.1007/s00705-022-05434-6
Pretorius, Lara-Simone, Chandra, Kerri A., Jooste, Anna E.C., Motaung, Lebogang C., Parkinson, Louisamarie E. and Geering, Andrew D.W. (2022). Adaptation of a filter paper method for RNA template preparation for the detection of avocado sunblotch viroid by reverse transcription qPCR. Journal of Virological Methods, 301 114455, 114455. doi: 10.1016/j.jviromet.2022.114455
Geering, Andrew D.W. and Thomas, John E (2022). An updated register of viruses and viroids that infect ornamental, turf and native plant species in Australia. Australasian Plant Pathology, 51 (2), 135-139. doi: 10.1007/s13313-021-00849-2
Chao, Hsu-Yao, Clements, Mark A., Mackenzie, Anne M., Dietzgen, Ralf G., Thomas, John E. and Geering, Andrew D. W. (2022). Viruses infecting greenhood orchids (Pterostylidinae) in Eastern Australia. Viruses, 14 (2) 365. doi: 10.3390/v14020365
Chambers, Grant A., Geering, Andrew D.W., Holford, Paul, Vidalakis, Georgios and Donovan, Nerida J. (2022). Development of a one-step RT-qPCR detection assay for the newly described citrus viroid VII. Journal of Virological Methods, 299 114330, 114330. doi: 10.1016/j.jviromet.2021.114330
Zakeel, Mohamed Cassim Mohamed, Alam, Mobashwer, Geering, Andrew D. W., Topp, Bruce and Akinsanmi, Olufemi A. (2021). Discovery of Single Nucleotide Polymorphisms for Resistance to Abnormal Vertical Growth in Macadamia. Frontiers in Plant Science, 12 756815, 756815. doi: 10.3389/fpls.2021.756815
Crous, P. W., Osieck, E. R., Jurjevi, Z., Boers, J., Van Iperen, A. L., Starink-Willemse, M., Dima, B., Balashov, S., Bulgakov, T. S., Johnston, P. R., Morozova, O., Pinruan, U., Sommai, S., Alvarado, P., Decock, C. A., Lebel, T., McMullan-Fisher, S., Moreno, G., Shivas, R. G., Zhao, L., Abdollahzadeh, J., Abrinbana, M., Ageev, D., Akhmetova, G., Alexandrova, A., Altes, A., Amaral, A. G. G., Angelini, C., Antonin, ... Groenewald, J. Z. (2021). Fungal Planet description sheets: 1284-1382. Persoonia, 47, 178-374. doi: 10.3767/persoonia.2021.47.06
Zakeel, Mohamed C. M., Geering, Andrew D. W., Thomas, John E. and Akinsanmi, Olufemi A. (2021). Characterisation of novel endogenous geminiviral elements in macadamia. BMC Genomics, 22 (1) 858, 858. doi: 10.1186/s12864-021-08174-0
Tran, Nga T., Teo, Ai Chin, Crew, Kathleen S., Campbell, Paul R., Thomas, John E. and Geering, Andrew D.W. (2021). Genome sequence and geographic distribution of a new nepovirus infecting Stenotaphrum secundatum in Australia. Virus Research, 305 198554, 198554. doi: 10.1016/j.virusres.2021.198554
Serfraz, Saad, Sharma, Vikas, Maumus, Florian, Aubriot, Xavier, Geering, Andrew D. W. and Teycheney, Pierre-Yves (2021). Insertion of badnaviral DNA in the late blight resistance gene (R1a) of brinjal eggplant (Solanum melongena). Frontiers in Plant Science, 12 683681, 683681. doi: 10.3389/fpls.2021.683681
Zakeel, Mohamed C. M., Akinsanmi, Olufemi A. and Geering, Andrew D. W. (2021). Molecular detection of putative pathogens to determine any role in a causal relationship with abnormal vertical growth syndrome of macadamia. European Journal of Plant Pathology, 161 (2), 427-437. doi: 10.1007/s10658-021-02333-5
Thomas, John E., Raymond, Myriam, Tran, Nga T., Crew, Kathleen S., Teo, Ai Chin and Geering, Andrew D. W. (2021). Complete genome sequences and properties of Spartina mottle virus isolates from hybrid Bermuda grass (Cynodon dactylon × Cynodon transvaalensis). Plant Pathology, 70 (5), 1062-1071. doi: 10.1111/ppa.13357
Uke, Ayaka, Pinili, Marita S., Natsuaki, Keiko T. and Geering, Andrew D. W. (2021). Complete genome sequence of aucuba ringspot virus. Archives of Virology, 166 (4), 1227-1230. doi: 10.1007/s00705-021-04977-4
Nurulita, Sari, Geering, Andrew D. W., Crew, Kathleen S., Harper, Stephen and Thomas, John E. (2020). First report of garlic virus E in Australia. Australasian Plant Disease Notes, 15 (1) 32. doi: 10.1007/s13314-020-00400-0
Tran, Nga T., Teo, Ai Chin, Thomas, John E., Crew, Kathleen S. and Geering, Andrew D. W. (2020). Sugarcane mosaic virus infects Stenotaphrum secundatum in Australia. Australasian Plant Disease Notes, 15 (1) 41, 1-4. doi: 10.1007/s13314-020-00410-y
Ngo, By Thu Ha, Webb, Richard, Crew, Kathleen S., Vance, Megan E., Thomas, John E. and Geering, Andrew D. W. (2020). Identification of putative viroplasms within banana cells infected by banana streak MY virus. Journal of General Virology, 101 (12), 1305-1312. doi: 10.1099/jgv.0.001498
Teycheney, Pierre-Yves, Geering, Andrew D. W., Dasgupta, Idranil, Hull, Roger, Kreuze, Jan F., Lockhart, Ben, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu, Pooggin, Mikhail M., Richert-Pöggeler, Katja R., Schoelz, James E., Seal, Susan, Stavolone, Livia, Umber, Marie and ICTV Report Consortium (2020). ICTV Virus taxonomy profile: Caulimoviridae. Journal of General Virology, 101 (10), 1025-1026. doi: 10.1099/jgv.0.001497
Zakeel, Mohamed C. M., Geering, Andrew D. W. and Akinsanmi, Olufemi A. (2020). Spatiotemporal spread of abnormal vertical growth of macadamia in Australia informs epidemiology. Phytopathology, 110 (7), PHYTO10190396R-1304. doi: 10.1094/phyto-10-19-0396-r
Parkinson, L. E., Pretorius, L-S. and Geering, A. D. W. (2020). Demonstrating pest-freedom from avocado sunblotch viroid with a smartphone app and improved detection methods. Talking Avocados, 31 (1), 63-66.
Tran, N. T., McTaggart, A. R., Drenth, A., Shivas, R. G., Loch, D. S., Kruse, J. and Geering, A. D. W. (2020). Couch smut, an economically important disease of Cynodon dactylon in Australia. Australasian Plant Pathology, 49 (2), 87-94. doi: 10.1007/s13313-020-00680-1
Persley, D., Steele, V., Sharman, M., Campbell, P., Geering, A. and Gambley, C. (2020). First report of a carlavirus infecting plants in the Fabaceae in Australia. New Disease Reports, 41 (1), 26-26. doi: 10.5197/j.2044-0588.2020.041.026
Aoki, Takayuki, Smith, Jason A., Kasson, Matthew T., Freeman, Stanley, Geiser, David M., Geering, Andrew D. W. and O'Donnell, Kerry (2019). Three novel Ambrosia Fusarium Clade species producing clavate macroconidia known (F. floridanum and F. obliquiseptatum) or predicted (F. tuaranense) to be farmed by Euwallacea spp. (Coleoptera: Scolytinae) on woody hosts. Mycologia, 111 (6), 1-17. doi: 10.1080/00275514.2019.1647074
Parkinson, L. E. and Geering, A. D. W. (2019). Building biosecurity capacity. Talking Avocados, 30 (2), 54-55.
Kuhn, David N, Freeman, Barbie, Geering, Andrew and Chambers, Alan H (2019). A highly sensitive method to detect avocado sunblotch viroid for the maintenance of infection-free avocado germplasm collections. Viruses, 11 (6) 512, 512. doi: 10.3390/v11060512
Geering, Andrew and Parkinson, Louisa (2019). Xylella fastidiosa, a high priority biosecurity threat for the Australian avocado industry. Talking Avocados, 30 (1), 49-50.
Geering, Andrew D. W. and McTaggart, Alistair R. (2019). Questions surrounding the taxonomic validity of the species Garlic mite-borne filamentous virus (genus Allexivirus). Archives of Virology, 164 (9), 2367-2370. doi: 10.1007/s00705-019-04333-7
Parkinson, Louisa and Geering, Andrew (2018). Biosecurity update on ambrosia beetles associated with avocado tree dieback. Talking Avocados, 29 (3), 54-56.
Geering, Andrew D. W. (2018). A review of the status of Avocado sunblotch viroid in Australia. Australasian Plant Pathology, 47 (6), 555-559. doi: 10.1007/s13313-018-0592-6
Doungsa-ard, C., McTaggart, A. R., Geering, A. D. W. and Shivas, R. G. (2018). Diversity of gall-forming rusts (Uromycladium, Pucciniales) on Acacia in Australia. Persoonia, 40 (1), 221-238. doi: 10.3767/persoonia.2018.40.09
Krupovic, Mart, Blomberg, Jonas, Coffin, John M., Dasgupta, Indranil, Fan, Hung, Geering, Andrew D., Gifford, Robert, Harrach, Balázs, Hull, Roger, Johnson, Welkin, Kreuze, Jan F., Lindemann, Dirk, Llorens, Carlos, Lockhart, Ben, Mayer, Jens, Muller, Emmanuelle, Olszewski, Neil, Pappu, Hanu R., Pooggin, Mikhail, Richert-Pöggeler, Katja R., Sabanadzovic, Sead, Sanfaçon, Hélène, Schoelz, James E., Seal, Susan, Stavolone, Livia, Stoye, Jonathan P., Teycheney, Pierre-Yves, Tristem, Michael, Koonin, Eugene V. and Kuhn, Jens H. (2018). Ortervirales: a new viral order unifying five families of reverse-transcribing viruses. Journal of Virology, 92 (12) e00515-18, e00515-18. doi: 10.1128/JVI.00515-18
Thomas, J. E., Geering, A. D.W. and Maynard, G. (2018). Detection of “Candidatus Liberibacter solanacearum” in tomato on Norfolk Island, Australia. Australasian Plant Disease Notes, 13 (1) 7, 6-7. doi: 10.1007/s13314-018-0289-2
Diop, Seydina Issa, Geering, Andrew D W, Alfama-Depauw, Françoise, Loaec, Mikaël, Teycheney, Pierre-Yves and Maumus, Florian (2018). Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae. Scientific reports, 8 (1) 572, 1-9. doi: 10.1038/s41598-017-16399-x
Akinsanmi, Olufemi A., Geering, Andrew D.W., Pandit, Pratibala, Topp, Bruce , O'Hare, P., Mulo, S. and Searle, C. (2017). Abnormal vertical growth syndrome in macadamia – how widespread, what causes it?. Australian Macadamia Society News Bulletin, 45 (4), 57-59.
Chittarath, Khonesavanh, So, Thavrith, Sor, Sarika, Rungsawang, Wasana, Pongsapich, Preyapan, Kong, Gary, Thomas, John E. and Geering, Andrew D. W. (2017). First record of Papaya ringspot virus in Cambodia and confirmation of its presence in Laos. Australasian Plant Disease Notes, 12 (1) 58. doi: 10.1007/s13314-017-0283-0
Pretorius, Lara, Moyle, Richard L., Dalton-Morgan, Jessica, Schwinghamer, Mark W., Crew, Kathy, Schenk, Peer M. and Geering, Andrew D. W. (2017). First fully sequenced genome of an Australian isolate of Cauliflower mosaic virus. Australasian Plant Pathology, 46 (6), 597-599. doi: 10.1007/s13313-017-0520-1
Chittarath, Khonesavanh, Rungsawang, Wasana, Pongsapich, Preyapan, Kong, Gary A., Thomas, John E. and Geering, Andrew D. W. (2017). First records of the potyviruses Chilli ringspot virus and Shallot yellow stripe virus from Laos. Australasian Plant Disease Notes, 12 (1) 53, 1-2. doi: 10.1007/s13314-017-0278-x
Kraberger, Simona, Geering, Andrew D. W., Walters, Matthew, Martin, Darren P. and Varsani, Arvind (2017). Novel mastreviruses identified in Australian wild rice. Virus Research, 238, 193-197. doi: 10.1016/j.virusres.2017.07.003
McTaggart, Alistair R., Shivas, Roger G., Doungsa-ard, Chanintorn, Weese, Terri L., Beasley, Dean R., Hall, Barbara H., Metcalf, Dean A. and Geering, Andrew D. W. (2016). Identification of rust fungi (Pucciniales) on species of Allium in Australia. Australasian Plant Pathology, 45 (6), 581-592. doi: 10.1007/s13313-016-0445-0
Khemmuk, Wanporn, Geering, Andrew D. W. and Shivas, Roger G. (2016). Wongia gen. nov. (Papulosaceae, Sordariomycetes), a new generic name for two root-infecting fungi from Australia. Ima Fungus, 7 (2), 247-252. doi: 10.5598/imafungus.2016.07.02.04
Vo, Jenny N., Campbell, Paul R., Mahfuz, Nur N., Ramli, Ras, Pagendam, Daniel, Barnard, Ross and Geering, Andrew D. W. (2016). Characterization of the banana streak virus capsid protein and mapping of the immunodominant continuous B-cell epitopes to the surfaceexposed N terminus. Journal of General Virology, 97 (12) 000643, 3446-3457. doi: 10.1099/jgv.0.000643
Mabvakure, Batsirai, Martin, Darren P., Kraberger, Simona, Cloete, Leendert, van Brunschot, Sharon, Geering, Andrew D. W., Thomas, John E., Bananej, Kaveh, Lett, Jean-Michel, Lefeuvre, Pierre, Varsani, Arvind and Harkins, Gordon W. (2016). Ongoing geographical spread of Tomato yellow leaf curl virus. Virology, 498, 257-264. doi: 10.1016/j.virol.2016.08.033
McTaggart, Alistair R., Shivas, Roger G., Doungsa-ard, Chanintorn, Weese, Terri L., Beasley, Dean R., Hall, Barbara H., Metcalf, Dean A. and Geering, Andrew D. W. (2016). Erratum to: Identification of rust fungi (Pucciniales) on species of Allium in Australia (Australasian Plant Pathology, (2016), 45, 6, (581-592), 10.1007/s13313-016-0445-0). Australasian Plant Pathology, 45 (6), 593-594. doi: 10.1007/s13313-016-0451-2
Khemmuk, Wanporn, Shivas, Roger G., Henry, Robert and Geering, Andrew D. W. (2016). Fungi associated with foliar diseases of wild and cultivated rice (Oryza spp.) in northern Queensland. Australasian Plant Pathology, 45 (3), 297-308. doi: 10.1007/s13313-016-0418-3
Camelo-Garcia, Viviana Marcela, da Silva Andrade, Sonia Cristina, Geering, Andrew D. W., Kitajima, Elliot Watanabe and Rezende, Jorge A. M. (2016). Genome organization and host range of a Brazilian isolate of johnsongrass mosaic virus. Archives of Virology, 161 (5), 1335-1341. doi: 10.1007/s00705-016-2772-4
McTaggart, A. R., Doungsa-ard, C., Geering, A. D. W., Aime, M. C. and Shivas, R. G. (2015). A co-evolutionary relationship exists between Endoraecium (Pucciniales) and its Acacia hosts in Australia. Persoonia, 35 (1), 50-62. doi: 10.3767/003158515X687588
Crous, P. W., Wingfield, M. J., Le Roux, J. J., Richardson, D. M., Strasberg, D., Shivas, R. G., Alvarado, P., Edwards, J., Moreno, G., Sharma, R., Sonawane, M. S., Tan, Y. P., Altes, A., Barasubiye, T., Barnes, C. W., Blanchette, R. A., Boertmann, D., Bogo, A., Carlavilla, J. R., Cheewangkoon, R., Daniel, R., de Beer, Z. W., de Jesus Yanez-Morales, M., Duong, T. A., Fernandez-Vicente, J., Geering, A. D. W., Guest, D. I., Held, B. W., Heykoop, M. ... Groenewald, J. Z. (2015). Fungal Planet description sheets: 371-399. Persoonia, 35 (1), 264-327. doi: 10.3767/003158515X690269
Vo, Jenny N., Mahfuz, Nur Nabihah, Lockhart, Benham E. L. and Geering, Andrew D. W. (2015). Improved methods for the purification and enrichment of banana streak virus for antibody production and protein detection. European Journal of Plant Pathology, 143 (3), 619-626. doi: 10.1007/s10658-015-0708-6
Crous, P. W., Wingfield, M. J., Guarro, J., Hernandez-Restrepo, M., Sutton, D. A., Acharya, K., Barber, P. A., Boekhout, T., Dimitrov, R. A., Duenas, M., Dutta, A. K., Gene, J., Gouliamova, D. E., Groenewald, M., Lombard, L., Morozova, O. V., Sarkar, J., Smith, M. Th., Stchigel, A. M., Wiederhold, N. P., Alexandrova, A. V., Antelmi, I., Armengol, J., Barnes, I., Cano-Lira, J. F., Castaneda Ruiz, R. F., Contu, M., Courtecuisse, Pr. R., da Silveira, A. L. ... Groenewald, J. Z. (2015). Fungal Planet description sheets: 320–370. Persoonia: Molecular Phylogeny and Evolution of Fungi, 34 (1), 167-266. doi: 10.3767/003158515X688433
Doungsa-ard, Chanintorn, McTaggart, Alistair R., Geering, Andrew D. W., Dalisay, Teresita U., Ray, Jane and Shivas, Roger G. (2015). Uromycladium falcatarium sp. nov., the cause of gall rust on Paraserianthes falcataria in south-east Asia. Australasian Plant Pathology, 44 (1), 25-30. doi: 10.1007/s13313-014-0301-z
Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi and Teycheney, Pierre-Yves (2014). Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications, 5 (1) 5269, 5269.1-5269.11. doi: 10.1038/ncomms6269
McTaggart, A. R., Geering, A. D. W. and Shivas, R. G. (2014). Uredinopsis pteridis and Desmella aneimiae, the first rust fungi (Pucciniales) reported on ferns (Pteridophyta) in Australia. Australasian Plant Disease Notes, 9 (149) 149, 1-4. doi: 10.1007/s13314-014-0149-7
McTaggart, Alistair R., Geering, Andrew D. W. and Shivas, Roger G. (2014). The rusts on Goodeniaceae and Stylidiaceae. Mycological Progress, 13 (4) 989, 1017-1025. doi: 10.1007/s11557-014-0989-8
van Brunschot, S. L., Bergervoet, J. H. W., Pagendam, D. E., de Weerdt, M., Geering, A. D. W., Drenth, A. and van der Vlugt, R. A. A. (2014). A bead-based suspension array for the multiplexed detection of begomoviruses and their whitefly vectors. Journal of Virological Methods, 198, 86-94. doi: 10.1016/j.jviromet.2013.12.014
van Brunschot, S. L., Verhoeven, J. Th, J., Persley, D. M., Geering, A. D. W., Drenth, A. and Thomas, J. E. (2014). An outbreak of Potato spindle tuber viroid in tomato is linked to imported seed. European Journal of Plant Pathology, 139 (1), 1-7. doi: 10.1007/s10658-014-0379-8
van Brunschot, Sharon L., Bergervoet, Jan H. W., Pagendam, Daniel E., de Weerdt, Marjanne, Geering, Andrew D. W., Drenth, André and van der Vlugt, René A. A. (2014). Development of a multiplexed bead-based suspension array for the detection and discrimination of Pospiviroid plant pathogens. PLoS One, 9 (1) e84743, e84743.1-e84743.12. doi: 10.1371/journal.pone.0084743
van Brunschot, S. L., Gambley, C. F., De Barro, P. J., Grams, R., Thomas, J. E., Henderson, J., Drenth, A. and Geering, A. D. W. (2013). Panel of real-time PCRs for the multiplexed detection of two tomato-infecting begomoviruses and their cognate whitefly vector species. Plant Pathology, 62 (5), 1132-1146. doi: 10.1111/ppa.12033
Kasson, Matthew T., O'Donnell, Kerry, Rooney, Alejandro P., Sink, Stacy, Ploetz, Randy C., Ploetz, Jill N., Konkol, Joshua L., Carrillo, Daniel, Freeman, Stanley, Mendel, Zvi, Smith, Jason A., Black, Adam W., Hulcr, Jiri, Bateman, Craig, Stefkova, Kristyna, Campbell, Paul R., Geering, Andrew D. W., Dann, Elizabeth K., Eskalen, Akif, Mohotti, Keerthi, Short, Dylan P. G., Aoki, Takayuki, Fenstermacher, Kristi A., Davis, Donald D. and Geiser, David M. (2013). An inordinate fondness for Fusarium: phylogenetic diversity of fusaria cultivated by ambrosia beetles in the genus Euwallacea on avocado and other plant hosts. Fungal Genetics and Biology, 56, 147-157. doi: 10.1016/j.fgb.2013.04.004
McTaggart, A. R., Geering, A. D. W. and Shivas, R. G. (2013). Thekopsora minima causes blueberry rust in south-eastern Queensland and northern New South Wales. Australasian Plant Disease Notes, 8 (1), 81-83. doi: 10.1007/s13314-013-0101-2
Blomme, G., Ploetz, R., Jones, D., De Langhe, E., Price, N., Gold, C., Geering, A., Viljoen, A., Karamura, D., Pillay, M., Tinzaara, W., Teycheney, P. -Y., Lepoint, P., Karamura, E. and Buddenhagen, I. (2013). A historical overview of the appearance and spread of Musa pests and pathogens on the African continent: highlighting the importance of clean Musa planting materials and quarantine measures. Annals of Applied Biology, 162 (1), 4-26. doi: 10.1111/aab.12002
McTaggart, A. R., Shivas, R. G., Geering, A. D. W., Vanky, K. and Scharaschkin, T. (2012). Taxonomic revision of Ustilago, Sporisorium and Macalpinomyces. Persoonia, 29 (1), 116-132. doi: 10.3767/003158512X661462
McTaggart, A. R., Shivas, R. G., Geering, A. D. W., Vanky, K. and Scharaschkin, T. (2012). A review of the Ustilago-Sporisorium-Macalpinomyces complex. Persoonia, 29 (1), 55-62. doi: 10.3767/003158512X660283
Kraberger, Simona, Thomas, John E., Geering, Andrew D. W., Dayaram, Anisha, Stainton, Daisy, Hadfield, James, Walters, Matthew, Parmenter, Kathleen S., van Brunschot, Sharon, Collings, David A., Martin, Darren P. and Varsani, Arvind (2012). Australian monocot-infecting mastrevirus diversity rivals that in Africa. Virus Research, 169 (1), 127-136. doi: 10.1016/j.virusres.2012.07.018
McTaggart, A. R., Shivas, R. G., Geering, A. D. W., Callaghan, B., Vanky, K. and Scharaschkin, T. (2012). Soral synapomorphies are significant for the systematics of the Ustilago-Sporisorium-Macalpinomyces complex (Ustilaginaceae). Persoonia, 29 (1), 63-77. doi: 10.3767/003158512X660562
Geering, Andrew D. W., Thomas, John E., Holton, Timothy, Hadfield, James and Varsani, Arvind (2012). Paspalum striate mosaic virus: An Australian mastrevirus from Paspalum dilatatum. Archives of Virology, 157 (1), 193-197. doi: 10.1007/s00705-011-1129-2
Young, Anthony J., Marney, Thomas S., Herrington, Mark, Hutton, Don, Gomez, Apollo O., Villiers, Adam, Campbell, Paul R. and Geering, Andrew D. W. (2011). Outbreak of angular leaf spot, caused by Xanthomonas fragariae, in a Queensland strawberry germplasm collection. Australasian Plant Pathology, 40 (3), 286-292. doi: 10.1007/s13313-011-0045-y
Geering, Andrew D. W., Parry, Judith N. and Thomas, John E. (2011). Complete genome sequence of a novel badnavirus, banana streak IM virus. Archives of Virology, 156 (4), 733-737. doi: 10.1007/s00705-011-0946-7
Van Brunschot, S. L., Persley, D. M., Geering, A. D. W., Campbell, P. R. and Thomas, J. E. (2010). Tomato yellow leaf curl virus in Australia: distribution, detection and discovery of naturally occurring defective DNA molecules. Australasian Plant Pathology, 39 (5), 412-423. doi: 10.1071/AP10083
Geering, Andrew D. W., Scharaschkin, Tanya and Teycheney, Pierre-Yves (2010). The classification and nomenclature of endogenous viruses of the family Caulimoviridae. Archives of Virology, 155 (1), 123-131. doi: 10.1007/s00705-009-0488-4
GambleyCF, GeeringADW and ThomasJE (2008). Development of an immunomagnetic capture-reverse transcriptase-PCR assay for three pineapple ampeloviruses. Journal of Virological Methods, 155 (2), 187-192. doi: 10.1016/j.jviromet.2008.10.006
GambleyCF, GeeringADW, SteeleV and ThomasJE (2008). Identification of viral and non-viral reverse transcribing elements in pineapple ( Ananas comosus ), including members of two new badnavirus species. Archives of Virology, 153 (8), 1599-1604. doi: 10.1007/s00705-008-0160-4
GambleyCF, SteeleV, GeeringADW and ThomasJE (2008). The genetic diversity of ampeloviruses in Australian pineapples and their association with mealybug wilt disease. Australasian Plant Pathology, 37 (2), 95-105. doi: 10.1071/AP07096
Harper, G., Hart, D., Moult, S., Hull, R., Geering, A. and Thomas, J. (2005). The diversity of Banana streak virus isolates in Uganda. Archives of Virology, 150 (12), 2407-2420. doi: 10.1007/s00705-005-0610-1
Geering, A. D. W., Pooggin, M. M., Olszewski, N. E., Lockhart, B. E. L. and Thomas, J. E. (2005). Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa. Archives of Virology, 150 (4), 787-796. doi: 10.1007/s00705-004-0471-z
Geering, Andrew D. W., Olszewski, Neil E., Harper, Glyn, Lockhart, Benham E. L., Hull, Roger and Thomas, John E. (2005). Banana contains a diverse array of endogenous badnaviruses. Journal of General Virology, 86 (2), 511-520. doi: 10.1099/vir.0.80261-0
Jones, A. Teifion, McGavin, Wendy J., Geering, A. D. W. and Lockhart, B. E. L. (2002). Identification of Rubus yellow net virus as a distinct badnavirus and its detection by PCR in Rubus species and in aphids. Annals of Applied Biology, 141 (1), 1-10. doi: 10.1111/j.1744-7348.2002.tb00189.x
Jones, A. T., McGavin, W. J., Geering, A. D. W. and Lockhart, B. E. L. (2001). A new badnavirus in Ribes species, its detection by PCR, and its close association with gooseberry vein banding disease. Plant Disease, 85 (4), 417-422. doi: 10.1094/PDIS.2001.85.4.417
Daniells, J. W., Geering, A. D. W., Bryde, N. J. and Thomas, J. E. (2001). The effect of Banana streak virus on the growth and yield of dessert bananas in tropical Australia. Annals of Applied Biology, 139 (1), 51-60. doi: 10.1111/j.1744-7348.2001.tb00130.x
Geering, ADW, McMichael, LA, Dietzgen, RG and Thomas, JE (2000). Genetic diversity among banana streak virus isolates from Australia (vol 90, pg 921, 2000). PHYTOPATHOLOGY, 90 (11), 1295-1295.
Geering, A. D. W., McMichael, L. A., Dietzgen, R. G. and Thomas, J. E. (2000). Genetic diversity among Banana streak virus isolates from Australia. Phytopathology, 90 (8), 921-927. doi: 10.1094/PHYTO.2000.90.8.921
Davis, R. I., Geering, A. D. W., Thomas, J. E., Gunua, T. G. and Rahamma, S. (2000). First records of Banana streak virus on the island of New Guinea. Australasian Plant Pathology, 29 (4), 281-281. doi: 10.1071/AP00053
Davis, R. I., Parry, J. N., Geering, A. D. W., Thomas, J. E. and Rahamma, S. (2000). Confirmation of the presence of Rice tungro bacilliform virus in Papua (formerly Irian Jaya), Indonesia. Australasian Plant Pathology, 29 (3), 223-223. doi: 10.1071/AP00040
Geering, A. D. W. and Thomas, J. E. (1999). Characterisation of a virus from Australia that is closely related to papaya mosaic potexvirus. Archives of Virology, 144 (3), 577-592. doi: 10.1007/s007050050526
Thomas, J. E., Geering, A. D. W., Gambley, C. F., Kessling, A. F. and White, M. (1997). Purification, properties, and diagnosis of banana bract mosaic potyvirus and its distinction from abaca mosaic potyvirus. Phytopathology, 87 (7), 698-705. doi: 10.1094/PHYTO.1997.87.7.698
Geering, A. D. W. and Thomas, J. E. (1997). Search for alternative hosts of banana bunchy top virus in Australia. Australasian Plant Pathology, 26 (4), 250-254. doi: 10.1071/AP97040
Geering, A. D. W. and Thomas, J. E. (1996). A comparison of four serological tests for the detection of banana bunchy top virus in banana. Australian Journal of Agricultural Research, 47 (3), 403-412. doi: 10.1071/AR9960403
Wetzel, T., Dietzgen, R. G., Geering, A. D. W. and Dale, J. L. (1994). Analysis of the nucleocapsid gene of lettuce necrotic yellows rhabdovirus. Virology, 202 (2) 71438, 1054-1057. doi: 10.1006/viro.1994.1438
Geering, A. D. W. and Randles, J. W. (1994). Interactions between a seed-borne strain of cucumber mosaic cucumovirus and its lupin host. Annals of Applied Biology, 124 (2), 301-314. doi: 10.1111/j.1744-7348.1994.tb04135.x
Conference Papers
Tran, Nga T. , McTaggart, Alistair , Teo, Ai Chin , Persley, Denis , Thomas, John and Geering, Andrew (2022). Distribution and genetic diversity of sugarcane mosaic virus in turf grasses in Australia. Australasian Plant Virology Workshop, Melbourne, Australia, 5-7 December 2022.
Tran, N. T., McTaggart, A. R., Drenth, A., Shivas, R. G., Loch, D. S. and Geering, A. D. W. (2019). Biology and epidemiology of smut (Ustilago cynodontis) in couch grass. Australasian Plant Pathology Conference, Melbourne, Australia, 25-28 November 2019.
Parkinson, L. E., Bransgrove, K., Dann, E. K. and Geering, A. D. W. (2019). Phylogeny of Fusarium associated with Euwallacea-vectored branch dieback of avocado and other woody tree hosts in Australia. Australasian Plant Pathology Society 22nd Biennial Conference - Strong Foundations, Future Innovations, Melbourne, VIC Australia, 25–28 November 2019. South Melbourne, VIC, Australia: ICMS Australasia.
Tran, N. T., McTaggart, A. R., Drenth, A., Shivas, R. G., Loch, D. S. and Geering, A. D. W. (2019). Distribution of Ustilago cynodontis within couch grass plants. TropAg Conference, Brisbane, QLD, Australia, 11-13 November 2019.
Parkinson, L. E., Bransgrove, K., Dann, E. K. and Geering, A. D. W. (2019). Biosecurity capacity building for the Australian avocado industry. IX World Avocado Congress, Medellín, Colombia, 23–27 September 2019. World Avocado Congress.
Parkinson, L. E., Bransgrove, K., Dann, E. K. and Geering, A. D. W. (2019). Biosecurity capacity for the Australian avocado industry. In: Shaping the science of tomorrow. International Tropical Agriculture Conference (TropAg) 2019, Brisbane, QLD Australia, (80-80). 11–13 November 2019.
Ngo, Ha, Crew, Kathy S., Vance, Megan, Thomas, John, Nguyen, Son, Duarte, Tania, Coin, Lachlan and Geering, Andrew (2019). New achievements for diagnostics of banana streak virus. Australasian Plant Pathology Society 22nd Biennial Conference, Melbourne, Australia, 26-28 November 2019. Melbourne, Australia:
Basnayake, S., Czislowski, E., Olsen, D., Basnayake, J., Aitken, E. and Geering, A. (2018). Contribution of Fusarium spp. to sugarcane yellow canopy syndrome (YCS) in Australia. International Congress of Plant Pathology (ICPP), Boston, Massachusetts, 29 July - 3 August 2018. St Paul, MN, United States: American Phytopathological Society.
Mctaggart, A. R., Doungsa-Ard, C., Geering, A., Aime, M. C. and Shivas, R. G. (2013). The systematics of Endoraecium in Australia. 2013 APS-MSA Joint Meeting, Austin, U.S.A., August 10–14, 2013. St. Paul, United States: American Phytopathological Society. doi: 10.1094/PHYTO-103-6-S2.1
Kasson, M. T., O'Donnell, K., Rooney, A. P., Sink, S., Ploetz, R. C., Ploetz, J. N., Konkol, J. L., Carrillo, D., Freeman, S., Mendel, Z., Smith, J. A., Black, A. W., Hulcr, J., Bateman, C., Stefkova, K., Campbell, P. R., Geering, A. D. W., Dann, E. K., Eskalen, A., Mohotti, K., Short, D. P. G., Aoki, T., Fenstermacher, K. A., Davis, D. D. and Geiser, D. M. (2013). An inordinate fondness for Fusarium: Phylogenetic diversity of fusaria cultivated by Euwallacea ambrosia beetles on avocado and other plant hosts. APS-MSA Joint Meeting, Austin, TX United States, 10=14 August 2013. Paul, MN United States: American Phytopathological Society.
Geering, A. D. W. (2009). Viral pathogens of banana: outstanding questions and options for control. International Symposium on Recent Advances in Banana Crop Protection for Sustainable Production and Improved Livelihoods, White River, South Africa, 1 May 2009. Leuven, Belgium: International Society for Horticultural Science.
Geering, A. D. W. (2009). The distribution of badnavirus-infected Musa germplasm from the International Transit Centre, Katholieke Universiteit Leuven, Belgium. International Symposium on Recent Advances in Banana Crop Protection for Sustainable Production and Improved Livelihoods, White River, South Africa, 10-14 September, 2007. Leuven, Belgium: International Society for Horticultural Science.
Lockhart, BEL and Geering, ADW (2002). Partial characterization of two aphid-transmitted viruses associated with yellow leafspot of Spiraea. 10th International Symposium on Virus Diseases of Ornamental Plants, Annapolis Md, May 27-Jun 01, 2000. LEUVEN 1: INTERNATIONAL SOCIETY HORTICULTURAL SCIENCE. doi: 10.17660/ActaHortic.2002.568.24
Remans, T., Schenk, P. M., Elliot, A. R., Sagi, L., Geering, A. D., McMichael, L. A., Thomas, J.E., Swennen, R. L., Grof, C. P., Manners, J. and Ebert, P.R. (1999). Promoters from Australian Banana streak Badna-Virus (BSV) isolates drive transgene expression in Banana, Sugarcane and Tobacco. ComBio 99, Conrad Jupiters, Gold Coast, 27-30 September, 1999. Kent Town, SA: Australian Society for Biochemistry and Molecular Biology.
Data Collection
Mohamed Zakeel, Mohamed Cassim, Olufemi, Akinsanmi and Andrew, Geering (2021). Sanger sequence data. The University of Queensland. (Dataset) doi: 10.14264/f801edd
Newspaper Article
Tran, N. T. and Geering, A. D. W. (2020, 06 30). Project update: understanding buffalo yellowing Turf Industry Magazine 10-12.
Patent
Schenk, P. M. P., Sagi, L., Remy, S., Swennen, R. L., Dietzgen, R. G., Geering, A. D. W., McMichael, L. A. , Thomas, J. E. , Grof, C. P. L. and Elliott, A. R. (2002). Plant and viral promoters PMP Schenk, L Sagi, S Remy, RL Swennen, RG Dietzgen, ADW Geering, LA McMichael, JE Thomas, CPL Grof, AR Elliott. CSIRO, 2002. United States Patent US 6,391,639 B1.. US Patent 6,391,639 B1.