Emeritus Professor Stephen Moore
Emeritus Professor
Queensland Alliance for Agriculture and Food Innovation
Level 3, Queensland BioScience Precinct #80
PhD and MPhil Supervision
- View current and completed supervisions on UQ Researchers.
Find out more information on how to apply for a Research Higher Degree (MPhil or PhD) with the School. For all enquiries regarding research supervision, please contact ask@uq.edu.au.
Journal Articles
Warburton, Christie L., Costilla, Roy, Engle, Bailey N., Moore, Stephen S., Corbet, Nicholas J., Fordyce, Geoffry, McGowan, Michael R., Burns, Brian M. and Hayes, Ben J. (2023). Concurrently mapping quantitative trait loci associations from multiple subspecies within hybrid populations. Heredity, 131 (5-6), 350-360. doi: 10.1038/s41437-023-00651-4
Poppi, David, Salini, Michael, Moore, Stephen, Simon, Cedric and Glencross, Brett (2023). Allometric scaling exponents for individual amino acids differ significantly from that of protein in juvenile barramundi (Lates calcarifer). Aquaculture, 565 739149, 739149. doi: 10.1016/j.aquaculture.2022.739149
Taghizadeh, Shadan, Gholizadeh, Mohsen, rahimi-Mianji, Ghodrat, Moradi, Mohammad Hossein, Costilla, Roy, Moore, Stephen and Di Gerlando, Rosalia (2022). Genome-wide identification of copy number variation and association with fat deposition in thin and fat-tailed sheep breeds. Scientific Reports, 12 (1) 8834, 8834. doi: 10.1038/s41598-022-12778-1
Ross, Elizabeth M., Sanjana, Hari, Nguyen, Loan T., Cheng, YuanYuan, Moore, Stephen S. and Hayes, Ben J. (2022). Extensive variation in gene expression is revealed in 13 fertility-related genes using RNA-Seq, ISO-Seq, and CAGE-Seq from Brahman cattle. Frontiers in Genetics, 13 784663, 784663. doi: 10.3389/fgene.2022.784663
Forutan, Mehrnush, Ross, Elizabeth, Chamberlain, Amanda J., Nguyen, Loan, Mason, Brett, Moore, Stephen, Garner, Josie B., Xiang, Ruidong and Hayes, Ben J. (2021). Evolution of tissue and developmental specificity of transcription start sites in Bos taurus indicus. Communications Biology, 4 (1) 829, 1-14. doi: 10.1038/s42003-021-02340-6
Kho, Elise A., Fernandes, Jill N., Kotze, Andrew C., Fox, Glen P., Sikulu-Lord, Maggy T., Beasley, Anne M., Moore, Stephen S. and James, Peter J. (2020). Influence of environmental factors on the detection of blood in sheep faeces using visible-near-infrared spectroscopy as a measure of Haemonchus contortus infection. Parasites and Vectors, 13 (1) 591, 591. doi: 10.1186/s13071-020-04468-6
Kho, Elise A., Fernandes, Jill N., Kotze, Andrew C., Fox, Glen P., Lord, Maggy, Beasley, Anne M., Moore, Stephen S. and James, Peter J. (2020). Visible-near infrared spectroscopy for detection of blood in sheep faeces. Journal of Near Infrared Spectroscopy, 28 (5-6), 255-266. doi: 10.1177/0967033520927519
Costilla, Roy, Kemper, Kathryn E., Byrne, Enda M., Porto-Neto, Laercio R., Carvalheiro, Roberto, Purfield, Deirdre C., Doyle, Jennifer L., Berry, Donagh P., Moore, Stephen S., Wray, Naomi R. and Hayes, Ben J. (2020). Genetic control of temperament traits across species: association of autism spectrum disorder risk genes with cattle temperament. Genetics Selection Evolution, 52 (1) 51, 51. doi: 10.1186/s12711-020-00569-z
Warburton, Christie L., Engle, Bailey N., Ross, Elizabeth M., Costilla, Roy, Moore, Stephen S., Corbet, Nicholas J., Allen, Jack M., Laing, Alan R., Fordyce, Geoffry, Lyons, Russell E., McGowan, Michael R., Burns, Brian M. and Hayes, Ben J. (2020). Use of whole-genome sequence data and novel genomic selection strategies to improve selection for age at puberty in tropically-adapted beef heifers. Genetics Selection Evolution, 52 (1) 28, 28. doi: 10.1186/s12711-020-00547-5
Kho, Elise A., Fernandes, Jill N., Kotze, Andrew C., Sikulu-Lord, Maggy T., Fox, Glen P., Beasley, Anne M., Moore, Stephen S. and James, Peter J. (2020). Detection of Haemonchus contortus nematode eggs in sheep faeces using near and mid-infrared spectroscopy. Journal of Near Infrared Spectroscopy, 28 (5-6), 096703352092449-254. doi: 10.1177/0967033520924491
Lau, Li Yieng, Nguyen, Loan T., Reverter, Antonio, Moore, Stephen S., Lynn, Aaron, McBride‐Kelly, Liam, Phillips‐Rose, Louis, Plath, Mackenzie, Macfarlane, Rhys, Vasudivan, Vanisha, Morton, Lachlan, Ardley, Ryan, Ye, Yunan and Fortes, Marina R. S. (2020). Gene regulation could be attributed to TCF3 and other key transcription factors in the muscle of pubertal heifers. Veterinary Medicine and Science, 6 (4) vms3.278, 695-710. doi: 10.1002/vms3.278
Lamb, Harrison J., Ross, Elizabeth M., Nguyen, Loan T., Lyons, Russell E., Moore, Stephen S. and Hayes, Ben J. (2020). Characterization of the poll allele in Brahman cattle using long-read Oxford Nanopore sequencing. Journal of Animal Science, 98 (5) skaa127, skaa127. doi: 10.1093/jas/skaa127
Poppi, David A., Moore, Stephen S., Wade, Nicholas M. and Glencross, Brett D. (2020). Adequate supply of dietary taurine stimulates expression of molecular markers of growth and protein turnover in juvenile barramundi (Lates calcarifer). Fish Physiology and Biochemistry, 46 (3), 953-969. doi: 10.1007/s10695-020-00762-3
Tahir, Muhammad S., Nguyen, Loan T., Schulz, Benjamin L., Boe-Hansen, Gry A., Thomas, Milton G., Moore, Stephen S., Lau, Li Yieng and Fortes, Marina R S (2019). Proteomics recapitulates ovarian proteins relevant to puberty and fertility in Brahman heifers (Bos indicus L.). Genes, 10 (11) 923, 923. doi: 10.3390/genes10110923
Carvalheiro, Roberto, Costilla, Roy, Neves, Haroldo H. R., Albuquerque, Lucia G., Moore, Stephen and Hayes, Ben J. (2019). Unraveling genetic sensitivity of beef cattle to environmental variation under tropical conditions. Genetics Selection Evolution, 51 (1) 29, 29. doi: 10.1186/s12711-019-0470-x
Poppi, David A., Moore, Stephen S., Wade, Nicholas M. and Glencross, Brett D. (2019). Postprandial plasma free amino acid profile and hepatic gene expression in juvenile barramundi (Lates calcarifer) is more responsive to feed consumption than to dietary methionine inclusion. Aquaculture, 501, 345-358. doi: 10.1016/j.aquaculture.2018.11.044
Li, Mingxun, Lu, Xubin, Xia, Hailei, Zhang, Chenglong, Wang, Xiaolong, Chen, Zhi, zhang, Huimin, Qu, Kaixing, Huang, Bizhi, Moore, Stephen, Mao, Yongjiang and Yang, Zhangping (2019). In-depth characterization of the pituitary transcriptome in Simmental and Chinese native cattle. Domestic Animal Endocrinology, 66, 35-42. doi: 10.1016/j.domaniend.2018.09.003
Koufariotis, L., Hayes, B. J., Kelly, M., Burns, B. M., Lyons, R., Stothard, P., Chamberlain, A. J. and Moore, S. (2018). Sequencing the mosaic genome of Brahman cattle identifies historic and recent introgression including polled. Scientific Reports, 8 (1) 17761, 17761. doi: 10.1038/s41598-018-35698-5
Zhang, Huimin, Jiang, Hongrui, Fan, Yongliang, Chen, Zhi, Li, Mingxun, Mao, Yongjiang, Karrow, Niel A., Loor, Juan J., Moore, Stephen and Yang, Zhangping (2018). Transcriptomics and iTRAQ-proteomics analyses of bovine mammary tissue with Streptococcus agalactiae-induced mastitis. Journal of Agricultural and Food Chemistry, 66 (42), 11188-11196. doi: 10.1021/acs.jafc.8b02386
Fortes, M. R.S., Zacchi, L. F., Nguyen, L. T., Raidan, F., Weller, M. M.D.C.A., Choo, J. J.Y., Reverter, A., Rego, J. P.A., Boe-Hansen, G. B., Porto-Neto, L. R., Lehnert, S. A., Cánovas, A., Schulz, B. L., Islas-Trejo, A., Medrano, J. F., Thomas, M. G. and Moore, S. S. (2018). Pre- and post-puberty expression of genes and proteins in the uterus of Bos indicus heifers: the luteal phase effect post-puberty. Animal Genetics, 49 (6), 539-549. doi: 10.1111/age.12721
Poppi, D. A., Moore, S. S. and Glencross, B. D. (2018). The effect of taurine supplementation to a plant-based diet for barramundi (Lates calcarifer) with varying methionine content. Aquaculture Nutrition, 24 (4), 1340-1350. doi: 10.1111/anu.12671
Nguyen, L. T., Zacchi, L. F., Schulz, B. L., Moore, S. S. and Fortes, M. R. S. (2018). Adipose tissue proteomic analyses to study puberty in Brahman heifers. Journal of Animal Science, 96 (6), 2392-2398. doi: 10.1093/jas/sky128
Farah, Michel Marques, Fortes, Marina Rufino Salinas, Kelly, Matthew, Porto-Neto, Laercio Ribeiro, Meira, Camila Tangari, Duitama Carreno, Luis Orlando, da Fonseca, Ricardo and Moore, Stephen Stewart (2018). Accuracy of genomic selection predictions for hip height in Brahman cattle using different relationship matrices. Pesquisa Agropecuaria Brasileira, 53 (6), 717-726. doi: 10.1590/S0100-204X2018000600008
Mota, Rodrigo Reis, Silva, Fabyano Fonseca e, Guimarães, Simone Eliza Facioni, Hayes, Ben, Fortes, Marina Rufino Salinas, Kelly, Matthew John, Guimarães, José Domingos, Penitente-Filho, Jurandy Mauro, Ventura, Henrique Torres and Moore, Stephen (2018). Benchmarking Bayesian genome enabled-prediction models for age at first calving in Nellore cows. Livestock Science, 211, 75-79. doi: 10.1016/j.livsci.2018.03.009
Nguyen, Loan T., Reverter, Antonio, Cánovas, Angela, Venus, Bronwyn, Anderson, Stephen T., Islas-Trejo, Alma, Dias, Marina M., Crawford, Natalie F., Lehnert, Sigrid A., Medrano, Juan F., Thomas, Milt G., Moore, Stephen S. and Fortes, Marina R.S. (2018). STAT6, PBX2, and PBRM1 emerge as predicted regulators of 452 differentially expressed genes associated with puberty in Brahman heifers. Frontiers in Genetics, 9 (MAR) 87, 1-13. doi: 10.3389/fgene.2018.00087
Abo-Ismail, M. K., Lansink, N., Akanno, E., Karisa, B., Crowley, J. J., Moore, Stephen, Bork, E., Stothard, P., Basarab, J. A. and Plastow, G. (2018). Development and validation of a small SNP panel for feed efficiency in beef cattle. Journal of Animal Science, 92 (2), 375-397. doi: 10.1093/jas/sky020
Mota, R. R., Guimarães, S. E. F., Fortes, M. R. S., Hayes, B., Silva, F. F., Verardo, L. L., Kelly, M. J., de Campos, C. F., Guimarães, J. D., Wenceslau, R. R., Penitente-Filho, J. M., Garcia, J. F. and Moore, S. (2017). Genome-wide association study and annotating candidate gene networks affecting age at first calving in Nellore cattle. Journal of Animal Breeding and Genetics, 134 (6), 484-492. doi: 10.1111/jbg.12299
Abo-Ismail, Mohammed K., Brito, Luiz F., Miller, Stephen P., Sargolzaei, Mehdi, Grossi, Daniela A., Moore, Steve S., Plastow, Graham, Stothard, Paul, Nayeri, Shadi and Schenkel, Flavio S. (2017). Genome-wide association studies and genomic prediction of breeding values for calving performance and body conformation traits in Holstein cattle. Genetics, Selection, Evolution, 49 (1) 82, 82. doi: 10.1186/s12711-017-0356-8
Soares, A. C. C., Guimaraes, S. E. F., Kelly, M. J., Fortes, M. R. S., e Silva, F. F., Verardo, L. L., Mota, R. R. and Moore, S. (2017). Multiple-trait genomewide mapping and gene network analysis for scrotal circumference growth curves in Brahman cattle. Journal of Animal Science, 95 (8), 3331-3345. doi: 10.2527/jas.2017.1409
Dias, M. M., Cánovas, A, Mantilla-Rojas, C, Riley, D. G., Luna-Nevarez, P, Coleman, S. J., Speidel, S. E., Enns, R. M., Islas-Trejo, A., Medrano, J. F., Moore, S. S., Fortes, M. R. S., Nguyen, L. T., Venus, B., Diaz, I. S. D. P., Souza, F. R. P., Fonseca, L. F. S., Baldi, F., Albuquerque, L. G., Thomas, M. G. and Oliveira, H. N. (2017). SNP detection using RNA-sequences of candidate genes associated with puberty in cattle. Genetics and Molecular Research, 16 (1) gmr16019522. doi: 10.4238/gmr16019522
Poppi, David A., Moore, Stephen S. and Glencross, Brett D. (2017). Redefining the requirement for total sulfur amino acids in the diet of barramundi (Lates calcarifer) including assessment of the cystine replacement value. Aquaculture, 471, 213-222. doi: 10.1016/j.aquaculture.2017.01.009
Nguyen, L. T., Reverter, A., Canovas, A., Venus, B., Islas-Trejo, A., Porto-Neto, L. R., Lehnert, S. A., Medrano, J. F., Moore, S. S. and Fortes, M. R. S. (2017). Global differential gene expression in the pituitary gland and the ovaries of pre- and postpubertal Brahman heifers. Journal of Animal Science, 95 (2), 599-615. doi: 10.2527/jas.2016.0921
Nayeri, S., Sargolzaei, M., Abo-Ismail, M. K., Miller, S., Schenkel, F., Moore, S. S. and Stothard, P. (2016). Genome-wide association study for lactation persistency, female fertility, longevity, and lifetime profit index traits in Holstein dairy cattle. Journal of Dairy Science, 100 (2), 1246-1258. doi: 10.3168/jds.2016-11770
Weller, Mayara Morena Del Cambre Amaral, Fortes, Marina Rufino S., Porto-Neto, Laercio R., Kelly, Matthew, Venus, Bronwyn, Kidd, Lisa, do Rego, Joao Paolo Arcelino, Edwards, Sophia, Boe-Hansen, Gry B., Piper, Emily, Lehnert, Sigrid A., Guimarães, Simon Eliza Facioni and Moore, Stephen Stewart (2016). Candidate gene expression in Bos indicus ovarian tissues: prepubertal and postpubertal heifers in diestrus. Frontiers in Veterinary Science, 3 (94) 94, 94. doi: 10.3389/fvets.2016.00094
Reverter, A., Porto-Neto, L. R., Fortes, M. R. S., McCulloch, R., Lyons, R. E., Moore, S., Nicol, D., Henshall, J. and Lehnert, S. A. (2016). Genomic analyses of tropical beef cattle fertility based on genotyping pools of brahman cows with unknown pedigree. Journal of Animal Science, 94 (10), 4096-4108. doi: 10.2527/jas.2016-0675
Fortes, M. R. S., Nguyen, L. T., Weller, M. M. D. C. A., Canovas, A., Islas-Trejo, A., Porto-Neto, L. R., Reverter, A., Lehnert, S. A., Boe-Hansen, G. B., Thomas, M. G., Medrano, J. F. and Moore, S. S. (2016). Transcriptome analyses identify five transcription factors differentially expressed in the hypothalamus of post-versus prepubertal Brahman heifers. Journal of Animal Science, 94 (9), 3693-3702. doi: 10.2527/jas.2016-0471
Fortes, Marina R.S., Nguyen, Loan To, Porto Neto, Laercio R., Reverter, Antonio, Moore, Stephen S., Lehnert, Sigrid A. and Thomas, Milton G. (2016). Polymorphisms and genes associated with puberty in heifers. Theriogenology, 86 (1), 333-339. doi: 10.1016/j.theriogenology.2016.04.046
Nayeri, Shadi, Sargolzaei, Mehdi, Abo-Ismail, Mohammed K., May, Natalie, Miller, Stephen P., Schenkel, Flavio, Moore, Stephen S. and Stothard, Paul (2016). Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle. BMC Genetics, 17 (1) 75, 75. doi: 10.1186/s12863-016-0386-1
Fleming, Allison L., Hays, Daniel P., Moore, Stephen, Plastow, Graham and Miller, Stephen P. (2016). History of the hays converter. Canadian Journal of Animal Science, 96 (4), 471-477. doi: 10.1139/cjas-2015-0201
Lu, D., Akanno, E. C., Crowley, J. J., Schenkel, F., Li, H., De Pauw, M., Moore, S. S., Wang, Z., Li, C., Stothard, P., Plastow, G., Miller, S. P. and Basarab, J. A. (2016). Accuracy of genomic predictions for feed efficiency traits of beef cattle using 50K and imputed HD genotypes. Journal of Animal Science, 94 (4), 1342-1353. doi: 10.2527/jas.2015-0126
Weller, M. M. D. C. A., Fortes, M. R. S., Marcondes, M. I., Rotta, P. P., Gionbeli, T. R. S., Filho, S. C., Campos, M. M., Silva, F. F., Silva, W., Moore, S. and Guimarães, S. E. F. (2016). Effect of maternal nutrition and days of gestation on pituitary gland and gonadal gene expression in cattle.. Journal of Dairy Science, 99 (4), 3056-3071. doi: 10.3168/jds.2015-9673
Farah, M. M., Swan, A. A., Fortes, M. R. S., Fonseca, R., Moore, S. S. and Kelly, M. J. (2016). Accuracy of genomic selection for age at puberty in a multi-breed population of tropically adapted beef cattle. Animal Genetics, 47 (1), 3-11. doi: 10.1111/age.12362
de Camargo, G. M. F., Aspilcueta-Borquis, R. R., Fortes, M. R. S., Porto-Neto, R., Cardoso, D. F., Santos, D. J. A., Lehnert, S. A., Reverter, A., Moore, S. S. and Tonhati, H. (2015). Prospecting major genes in dairy buffaloes. BMC Genomics, 16 (872) 872, 1-14. doi: 10.1186/s12864-015-1986-2
Stothard, Paul, Liao, Xiaoping, Arantes, Adriano S., De Pauw, Mary, Coros, Colin, Plastow, Graham S., Sargolzaei, Mehdi, Crowley, John J., Basarab, John A., Schenkel, Flavio, Moore, Stephen and Miller, Stephen P. (2015). A large and diverse collection of bovine genome sequences from the Canadian Cattle Genome Project. Gigascience, 4 (49) 49, 49. doi: 10.1186/s13742-015-0090-5
Camporez Crispim, Aline, Kelly, Matthew John, Facioni Guimarães, Simone Eliza, Fonseca e Silva, Fabyano, Rufino Salinas Fortes, Marina, Rocha Wenceslau, Raphael and Moore, Stephen (2015). Multi-Trait GWAS and new candidate genes annotation for growth curve parameters in Brahman cattle. PLoS ONE, 10 (10) e0139906, e0139906.1-e0139906.19. doi: 10.1371/journal.pone.0139906
Miller, Joshua M., Moore, Stephen S., Stothard, Paul, Liao, Xiaping and Coltman, David W. (2015). Harnessing cross-species alignment to discover SNPs and generate a draft genome sequence of a bighorn sheep (Ovis canadensis). BMC Genomics, 16 (1) 397, 397-397. doi: 10.1186/s12864-015-1618-x
Ferreira de Camargo, Gregorio Miguel, Porto-Neto, Laercio R., Kelly, Matthew J., Bunch, Rowan J., McWilliam, Sean M., Tonhati, Humberto, Lehnert, Sigrid A., Fortes, Marina R. S. and Moore, Stephen S. (2015). Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle. BMC Genomics, 16 (1) 384, 384.1-384.10. doi: 10.1186/s12864-015-1595-0
Andersson, Leif, Archibald, Alan L., Bottema, Cynthia D., Brauning, Rudiger, Burgess, Shane C., Burt, Dave W., Casas, Eduardo, Cheng, Hans H., Clarke, Laura, Couldrey, Christine, Dalrymple, Brian P., Elsik, Christine G., Foissac, Sylvain, Giuffra, Elisabetta, Groenen, Martien A., Hayes, Ben J., Huang, LuSheng S., Khatib, Hassan, Kijas, James W., Kim, Heebal, Lunney, Joan K., McCarthy, Fiona M., McEwan, John C., Nanduri, Bindu, Notredame, Cedric, Palti, Yniv, Plastow, Graham S., Reecy, James M., Rohrer, Gary A. ... Fortes, Marina (2015). Coordinated international action to accelerate genome-to-phenome with FAANG, the Functional Annotation of Animal Genomes project. Genome Biology, 16 (1) 57, 1-6. doi: 10.1186/s13059-015-0622-4
de Camargo, Gregório M. F., Porto-Neto, Laercio R., Fortes, Marina R. S., Bunch, Rowan J., Tonhati, Humberto, Reverter, Antonio, Moore, Stephen S. and Lehnert, Sigrid A. (2015). Low frequency of Y anomaly detected in Australian Brahman cow-herds. Meta Gene, 3, 59-61. doi: 10.1016/j.mgene.2015.01.001
Meira, Camila Tangari, Fortes, Marina R. S., Farah, Michel Marques, Porto-Neto, Laercio R., Kelly, Matthew, Moore, Stephen S., Pereira, Guilherme L., Chardulo, Luis Artur Loyola and Curi, Rogerio Abdallah (2014). Speed index in the racing quarter horse: a genome-wide association study. Journal of Equine Veterinary Science, 34 (11-12), 1263-1268. doi: 10.1016/j.jevs.2014.09.003
Miar, Younes, Plastow, Graham, Bruce, Heather, Moore, Stephen, Manafiazar, Ghader, Kemp, Robert, Charagu, Patrick, Huisman, Abe, van Haandel, Benny, Zhang, Chunyan, McKay, Robert and Wang, Zhiquan (2014). Genetic and phenotypic correlations between performance traits with meat quality and carcass characteristics in commercial crossbred pigs. PLoS ONE, 9 (10) e110105, 1-12. doi: 10.1371/journal.pone.0110105
Meira, Camila Tangari, Farah, Michel Marques, Fortes, Marina R. S., Moore, Stephen S., Pereira, Guilherme L., Silva, Josineudson Augusto V., da Mota, Marcilio Dias S. and Curi, Rogerio Abdallah (2014). A genome-wide association study for morphometric traits in quarter horse. Journal of Equine Veterinary Science, 34 (8), 1028-1031. doi: 10.1016/j.jevs.2014.05.011
Fortes, Marina R. S., Suhaimi, Ainu H. M. S., Porto-Neto, Laercio R., McWilliam, Sean M., Flatscher-Bader, Trudi, Moore, Stephen S., D'Occhio, Michael J., Meira, Camila T., Thomas, Milton G., Snelling, Warren M., Reverter, Antonio and Lehnert, Sigrid A. (2014). Post-partum anoestrus in tropical beef cattle: a systems approach combining gene expression and genome-wide association results. Livestock Science, 166 (1), 158-166. doi: 10.1016/j.livsci.2014.06.017
Zhang, C. Y., Wang, Z., Bruce, H. L., Janz, J., Goddard, E., Moore, S. and Plastow, G. S. (2014). Associations between single nucleotide polymorphisms in 33 candidate genes and meat quality traits in commercial pigs. Animal Genetics, 45 (4), 508-516. doi: 10.1111/age.12155
Liao, Xiaoping, Bao, Hua, Meng, Yan, Plastow, Graham, Moore, Stephen and Stothard, Paul (2014). Sequence, structural and expression divergence of duplicate genes in the bovine genome. PLoS One, 9 (7) e102868, e102868.1-e102868.7. doi: 10.1371/journal.pone.0102868
Karisa, B. K., Thomson, J., Wang, Z., Li, C., Montanholi, Y. R., Miller, S. P., Moore, S. S. and Plastow, G. S. (2014). Plasma metabolites associated with residual feed intake and other productivity performance traits in beef cattle. Livestock Science, 165 (1), 200-211. doi: 10.1016/j.livsci.2014.03.002
Ramayo-Caldas, Y., Fortes, M. R. S., Hudson, N. J., Porto-Neto, L. R., Bolormaa, S., Barendse, W., Kelly, M., Moore, S. S., Goddard, M. E., Lehnert, S. A. and Reverter, A. (2014). A marker-derived gene network reveals the regulatory role of PPARGC1A, HNF4G, and FOXP3 in intramuscular fat deposition of beef cattle. Journal of Animal Science, 92 (7), 2832-2845. doi: 10.2527/jas.2013-7484
Miar, Y., Plastow, G. S., Bruce, H. L., Moore, S. S., Durunna, O. N., Nkrumah, J. D. and Wang, Z. (2014). Estimation of genetic and phenotypic parameters for ultrasound and carcass merit traits in crossbred beef cattle. Canadian Journal of Animal Science, 94 (2), 273-280. doi: 10.4141/CJAS2013-115
Karisa, Brian, Moore, Stephen and Plastow, Graham (2014). Analysis of biological networks and biological pathways associated with residual feed intake in beef cattle. Animal Science Journal, 85 (4), 374-387. doi: 10.1111/asj.12159
Abo-Ismail, Mohammed K., Vander Voort, Gordon, Squires, James J., Swanson, Kendall C., Mandell, Ira B., Liao, Xiaoping, Stothard, Paul, Moore, Stephen, Plastow, Graham and Miller, Stephen P. (2014). Single nucleotide polymorphisms for feed efficiency and performance in crossbred beef cattle. BMC Genetics, 15 (1) 14, 14.1-14.14. doi: 10.1186/1471-2156-15-14
Lyons, Russell E., Loan, Nguyen To, Dierens, Leanne, Fortes, Marina R. S., Kelly, Matthew, McWilliam, Sean S., Li, Yutao, Bunch, Rowan J., Harrison, Blair E., Barendse, William, Lehnert, Sigrid A. and Moore, Stephen S. (2014). Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattle. BMC Genetics, 15 (1) 6, 6.1-6.10. doi: 10.1186/1471-2156-15-6
Bensch, Staffan, Coltman, David W., Davis, Corey S., Hellgren, Olof, Johansson, Tomas, Malenfant, Rene M., Moore, Stephen S., Palinauskas, Vaidas, Valkiunas, Gediminas and Genomic Resources Development Consortium (2014). Genomic resources notes accepted 1 June 2013-31 July 2013. Molecular Ecology Resources, 14 (1), 218-218. doi: 10.1111/1755-0998.12166
Fortes, M. R. S., Satake, N., Corbet, D. H., Corbet, N. J., Burns, B. M., Moore, S. S. and Boe-Hansen, G. B. (2014). Sperm protamine deficiency correlates with sperm DNA damage in Bos indicus bulls. Andrology, 2 (3), 370-378. doi: 10.1111/j.2047-2927.2014.00196.x
Omana, D. A., Goddard, E., Plastow, G. S., Janz, J., Ma, L., Anders, S., Moore, S. S. and Bruce, H. L. (2014). Influence of on-farm production practices on sensory and technological quality characteristics of pork loin. Meat Science, 96 (1), 315-320. doi: 10.1016/j.meatsci.2013.07.011
Lu, Duc, Sargolzaei, Mehdi, Li, Changxi, Abo-Ismail, Mohammed, Vander Voort, Gordon, Wang, Zhiquan, Plastow, Graham, Moore, Stephen and Miller, Stephen P. (2013). Association analysis for feed efficiency traits in beef cattle using preserved haplotypes. Genome, 56 (10), 586-591. doi: 10.1139/gen-2013-0072
Lu, Duc, Sargolzaei, Mehdi, Kelly, Matthew, Vander Voort, Gordon, Wang, Zhiquan, Mandell, Ira, Moore, Stephen, Plastow, Graham and Miller, Stephen Paul (2013). Genome-wide association analyses for carcass quality in crossbred beef cattle. BMC Genetics, 14 (1) 80, 80.1-80.10. doi: 10.1186/1471-2156-14-80
Karisa, B. K., Thomson, J., Wang, Z., Bruce, H. L., Plastow, G. S. and Moore, S. S. (2013). Candidate genes and biological pathways associated with carcass quality traits in beef cattle. Canadian Journal of Animal Science, 93 (3), 295-306. doi: 10.4141/CJAS2012-136
Fortes, Marina R. S., DeAtley, Kasey L., Lehnert, Sigrid A., Burns, Brian M., Reverter, Antonio, Hawken, Rachel J., Boe-Hansen, Gry, Moore, Stephen S. and Thomas, Milton G. (2013). Genomic regions associated with fertility traits in male and female cattle: Advances from microsatellites to high-density chips and beyond. Animal Reproduction Science, 141 (1-2), 1-19. doi: 10.1016/j.anireprosci.2013.07.002
Lu, D., Miller, S., Sargolzaei, M., Kelly, M., Voort, G. Vander, Caldwell, T., Wang, Z., Plastow, G. and Moore, S. (2013). Genome-wide association analyses for growth and feed efficiency traits in beef cattle. Journal of Animal Science, 91 (8), 3612-3633. doi: 10.2527/jas2012-5716
Karisa, B. K., Thomson, J., Wang, Z., Stothard, P., Moore, S. S. and Plastow, G. S. (2013). Candidate genes and single nucleotide polymorphisms associated with variation in residual feed intake in beef cattle. Journal of Animal Science, 91 (8), 3502-3513. doi: 10.2527/jas.2012-6170
Lee, Kyung-Tai, Chung, Won-Hyong, Lee, Sung-Yeoun, Choi, Jung-Woo, Kim, Jiwoong, Lim, Dajeong, Lee, Seunghwan, Jang, Gul-Won, Kim, Bumsoo, Choy, Yun Ho, Liao, Xiaoping, Stothard, Paul, Moore, Stephen S., Lee, Sang-Heon, Ahn, Sungmin, Kim, Namshin and Kim, Tae-Hun (2013). Whole-genome resequencing of Hanwoo (Korean cattle) and insight into regions of homozygosity. BMC Genomics, 14 (1) 519, 519.1-519.14. doi: 10.1186/1471-2164-14-519
Choi, Jung-Woo, Lee, Kyung-Tai, Liao, Xiaoping, Stothard, Paul, An, Hyeon-Seung, Ahn, Sungmin, Lee, Seunghwan, Lee, Sung-Yeoun, Moore, Stephen S. and Kim, Tae-Hun (2013). Genome-wide copy number variation in Hanwoo, Black Angus, and Holstein cattle. Mammalian Genome, 24 (3-4), 151-163. doi: 10.1007/s00335-013-9449-z
Hernandez-Sanabria, Emma, Goonewardene, Laksiri A., Wang, Zhiquan, Zhou, Mi, Moore, Stephen S. and Guan, Le Luo (2013). Influence of sire breed on the interplay among rumen microbial populations inhabiting the rumen liquid of the progeny in beef cattle. PLoS One, 8 (3) e58461, e58461.1-e58461.15. doi: 10.1371/journal.pone.0058461
Durunna, Obioha N., Mujibi, Fidalis D. N., Nkrumah, Donald J., Basarab, John A., Okine, Erasmus K., Moore, Stephen S. and Wang, Zhiquan (2013). Genetic parameters for production and feeding behaviour traits in crossbred steers fed a finishing diet at different ages. Canadian Journal of Animal Science, 93 (1), 79-87. doi: 10.4141/CJAS2012-075
Sabaa, Hadi, Cai, Zhipeng, Wang, Yining, Goebel, Randy, Moore, Stephen and Lin, Guohui (2013). Whole genome identity-by-descent determination. Journal of Bioinformatics and Computational Biology, 11 (2) 1350002, 1350002. doi: 10.1142/S0219720013500029
Thomson, Jennifer M., Bowles, Victoria, Choi, Jung-Woo, Basu, Urmila, Meng, Yan, Stothard, Paul and Moore, Stephen (2012). The identification of candidate genes and SNP markers for classical bovine spongiform encephalopathy susceptibility. Prion, 6 (5), 461-469. doi: 10.4161/pri.21866
Wang, Z., Colazo, M. G., Basarab, J. A., Goonewardene, L. A., Ambrose, D. J., Marques, E., Plastow, G., Miller, S. P. and Moore, S. S. (2012). Impact of selection for residual feed intake on breeding soundness and reproductive performance of bulls on pasture-based multisire mating. Journal of Animal Science, 90 (9), 2963-2969. doi: 10.2527/jas.2011-4521
Lu, Duc, Sargolzaei, Mehdi, Kelly, Matthew, Li, Changxi, Vander Voort, Gordon, Wang, Zhiquan, Plastow, Graham, Moore, Stephen and Miller, Stephen P. (2012). Linkage disequilibrium in Angus, Charolais, and Crossbred beef cattle. Frontiers in Genetics, 3 (AUG) Article 152, 152.1-152.10. doi: 10.3389/fgene.2012.00152
Basu, Urmila, Guan, Le Luo and Moore, Stephen S. (2012). Functional Genomics Approach for Identification of Molecular Processes Underlying Neurodegenerative Disorders in Prion Diseases. Current Genomics, 13 (5), 369-378. doi: 10.2174/138920212801619223
Jiang, Qi, Wang, Zhiquan, Moore, Stephen S and Yang, Rong-Cai (2012). Genome-wide analysis of zygotic linkage disequilibrium and its components in crossbred cattle. BMC Genetics, 13 (65) 65. doi: 10.1186/1471-2156-13-65
Zeng, ZhiYao, Tang, GuoQing, Ma, JiDeng, Plastow, Graham, Moore, Stephen, Lai, SongJia, Li, XueWei and Wang, ZhiQuan (2012). Developing a genome-wide selection model for genetic improvement of residual feed intake and carcass merit in a beef cattle breeding program. Chinese Science Bulletin, 57 (21), 2741-2746. doi: 10.1007/s11434-012-5325-6
Hu, Xin-Sheng, Simila, Janika, Platz, Sindey Schueler, Moore, Stephen S., Plastow, Graham and Meghen, Ciaran N. (2012). Estimating animal abundance in ground beef batches assayed with molecular markers. PLoS One, 7 (3) e34191, e34191. doi: 10.1371/journal.pone.0034191
Hernandez-Sanabria, Emma, Goonewardene, Laksiri A., Wang, Zhiquan, Durunna, Obioha N., Moore, Stephen S. and Guan, Le Luo (2012). Impact of feed efficiency and diet on adaptive variations in the bacterial community in the rumen fluid of cattle. Applied and Environmental Microbiology, 78 (4), 1203-1214. doi: 10.1128/AEM.05114-11
Basu, Urmila, Almeida, Luciane M., Dudas, Sandor, Graham, Catherine E., Czub, Stefanie, Moore, Stephen S. and Guan, Le Luo (2012). Gene expression alterations in rocky mountain elk infected with chronic wasting disease. Prion, 6 (3), 282-301. doi: 10.4161/pri.19915
Miller, Joshua M., Malenfant, René M., Moore, Stephen S. and Coltman, David W. (2012). Short reads, circular genome: skimming SOLiD sequence to construct the bighorn sheep mitochondrial genome. Journal of Heredity, 103 (1), 140-146. doi: 10.1093/jhered/esr104
Jin, W., Olson, E. N., Moore, S. S., Basarab, J. A., Basu, U. and Guan, L. L. (2012). Transcriptome analysis of subcutaneous adipose tissues in beef cattle using 3' digital gene expression-tag profiling. Journal of Animal Science, 90 (1), 171-183. doi: 10.2527/jas.2011-4229
Stothard, Paul, Choi, Jung-Woo, Basu, Urmila, Sumner-Thomsen, Jennifer M., Meng, Yan, Liao, Xiaoping and Moore, Stephen S. (2011). Whole genome resequencing of Black Angus and Holstein cattle for SNP and CNV discovery. BMC Genomics, 12 (559) 559, 1-14. doi: 10.1186/1471-2164-12-559
Murdoch, Brenda M., Murdoch, Gordon K., Settles, Matthew, McKay, Stephanie, Williams, John L. and Moore, Stephen S. (2011). Genome-wide scan identifies loci associated with classical BSE occurrence. PLoS One, 6 (11) e26819, e26819.1-e26819.7. doi: 10.1371/journal.pone.0026819
Durunna, O. N., Wang, Z., Basarab, J. A., Okine, E. K. and Moore, S. S. (2011). Phenotypic and genetic relationships among feeding behavior traits, feed intake, and residual feed intake in steers fed grower and finisher diets. Journal of Animal Science, 89 (11), 3401-3409. doi: 10.2527/jas.2011-3867
Durunna, O. N., Plastow, G., Mujibi, F. D. N., Grant, J., Mah, J., Basarab, J. A., Okine, E. K., Moore, S. S. and Wang, Z. (2011). Genetic parameters and genotype x environment interaction for feed efficiency traits in steers fed grower and finisher diets. Journal of Animal Science, 89 (11), 3394-3400. doi: 10.2527/jas.2010-3516
Mujibi, F. D. N., Nkrumah, J. D., Durunna, O. N., Grant, J. R., Mah, J., Wang, Z., Basarab, J., Plastow, G., Crews, D. H. and Moore, S. S. (2011). Associations of marker panel scores with feed intake and efficiency traits in beef cattle using preselected single nucleotide polymorphisms. Journal of Animal Science, 89 (11), 3362-3371. doi: 10.2527/jas.2010-3362
Almeida, L. M., Basu, U., Williams, J. L., Moore, S. S. and Guan, L. L. (2011). Microarray analysis in caudal medulla of cattle orally challenged with bovine spongiform encephalopathy. Genetics and Molecular Research, 10 (4), 3948-3962. doi: 10.4238/2011.October.25.5
Tang, G., Stewart-Smith, J., Plastow, G., Moore, S., Basarab, J., MacNeil, M. and Wang, Z. (2011). Optimizing a beef production system using specialized sire and dam lines. Canadian Journal of Animal Science, 91 (3), 353-361. doi: 10.4141/cjas10073
Romao, Josue M., Jin, Weiwu, Dodson, Michael V., Hausman, Gary J., Moore, Stephen S. and le Guan, Luo (2011). MicroRNA regulation in mammalian adipogenesis. Experimental Biology and Medicine, 236 (9), 997-1004. doi: 10.1258/ebm.2011.011101
Marques, E., Grant, J. R., Wang, Z., Kolbehdari, D., Stothard, P., Plastow, G. and Moore, S. S. (2011). Identification of candidate markers on bovine chromosome 14 (BTA14) under milk production trait quantitative trait loci in Holstein. Journal of Animal Breeding and Genetics, 128 (4), 305-313. doi: 10.1111/j.1439-0388.2010.00910.x
Qanbari, Saber, Gianola, Daniel, Hayes, Ben, Schenkel, Flavio, Miller, Steve, Moore, Stephen, Thaller, Georg and Simianer, Henner (2011). Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle. BMC Genomics, 12 (1) 318. doi: 10.1186/1471-2164-12-318
Mujibi, F. D. N., Nkrumah, J. D., Durunna, O. N., Stothard, P., Mah, J., Wang, Z., Basarab, J., Plastow, G., Crews Jr., D. H. and Moore, S. S. (2011). Accuracy of genomic breeding values for residual feed intake in crossbred beef cattle. Journal of Animal Science, 89 (11), 3353-3361. doi: 10.2527/jas.2010-336
Nalaila, Sungael, Stothard, Paul, Moore, Stephen, Wang, Zhiquan and Li, Changxi (2011). Whole genome fine mapping of quantitative trait loci for ultrasound and carcass merit traits in beef cattle. Canadian Journal of Animal Science, 91 (1), 61-73. doi: 10.4141/CJAS10007
Clark, Melody S., Thorne, Michael A. S., Toullec, Jean-Yves, Meng, Yan, Guan, Le Luo, Peck, Lloyd S. and Moore, Stephen (2011). Antarctic krill 454 pyrosequencing reveals chaperone and stress transcriptome. PLoS ONE, 6 (1) e15919, e15919. doi: 10.1371/journal.pone.0015919
Almeida, Luciane M., Basu, Urmila, Khaniya, Bina, Taniguchi, Masaaki, Williams, John L., Moore, Stephen S. and Guan, Le Luo (2011). Gene expression in the medulla following oral infection of cattle with bovine spongiform encephalopathy. Journal of Toxicology and Environmental Health Part A: Current Issues, 74 (2-4), 110-126. doi: 10.1080/15287394.2011.529061
Basu, Urmila, Almeida, Luciane, Olson, N. Eric, Meng, Yan, Williams, John L., Moore, Stephen S. and Guan, Le Luo (2011). Transcriptome analysis of the medulla tissue from cattle in response to bovine spongiform encephalopathy using digital gene expression tag profiling. Journal of Toxicology and Environmental Health Part A: Current Issues, 74 (2-4), 127-137. doi: 10.1080/15287394.2011.529062
Durunna, O. N., Mujibi, F. D. N., Goonewardene, L., Okine, E. K., Basarab, J. A., Wang, Z. and Moore, S. S. (2011). Feed efficiency differences and reranking in beef steers fed grower and finisher diets. Journal of Animal Science, 89 (1), 158-167. doi: 10.2527/jas.2009-2514
Murdoch, Brenda M., Clawson, Michael L., Yue, Samuel, Basu, Urmila, McKay, Stephanie, Settles, Matthew, Capoferri, Rossana, Laegreid, William W., Williams, John L. and Moore, Stephen S. (2010). PRNP haplotype associated with classical BSE incidence in European Holstein cattle. PLoS ONE, 5 (9) e12786, 1-6. doi: 10.1371/journal.pone.0012786
Hernandez-Sanabria, Emma, Guan, Le Luo, Goonewardene, Laksiri A., Li, Mujibi, Meiju, Denis F., Stothard, Paul, Moore, Stephen S. and Leon-Quintero, Monica C. (2010). Correlation of particular bacterial pcr-denaturing gradient gel electrophoresis patterns with bovine ruminal fermentation parameters and feed efficiency traits. Applied and Environmental Microbiology, 76 (19), 6338-6350. doi: 10.1128/AEM.01052-10
Gorbach, D. M., Makgahlela, M. L., Reecy, J. M., Kemp, S. J., Baltenweck, I., Ouma, R., Mwai, O., Marshall, K., Murdoch, B., Moore, S. and Rothschild, M. F. (2010). Use of SNP genotyping to determine pedigree and breed composition of dairy cattle in Kenya. Journal of Animal Breeding and Genetics, 127 (5), 348-351. doi: 10.1111/j.1439-0388.2010.00864.x
Jin, Weiwu, Dodson, Michael V., Moore, Stephen S., Basarab, John A. and Guan, Le Luo (2010). Characterization of microRNA expression in bovine adipose tissues: A potential regulatory mechanism of subcutaneous adipose tissue development. BMC Molecular Biology, 11 (1) 29. doi: 10.1186/1471-2199-11-29
Murdoch, Brenda M., Clawson, Michael L., Laegreid, William W., Stothard, Paul, Settles, Matthew, McKay, Stephanie, Prasad, Aparna, Wang, Zhiquan, Moore, Stephen S. and Williams, John L. (2010). A 2cM genome-wide scan of European Holstein cattle affected by classical BSE. BMC Genetics, 11 (1) 20. doi: 10.1186/1471-2156-11-20
Pant, Sameer D., Schenkel, Flavio S., Verschoor, Chris P., You, Qiumei, Kelton, David F., Moore, Stephen S. and Karrow, Niel A. (2010). A principal component regression based genome wide analysis approach reveals the presence of a novel QTL on BTA7 for MAP resistance in holstein cattle. Genomics, 95 (3), 176-182. doi: 10.1016/j.ygeno.2010.01.001
Sherman, E. L., Nkrumah, J. D. and Moore, S. S. (2010). Whole genome single nucleotide polymorphism associations with feed intake and feed efficiency in beef cattle. Journal of Animal Science, 88 (1), 16-22. doi: 10.2527/jas.2008-1759
Matukumalli, Lakshmi K., Lawley, Cynthia T., Schnabel, Robert D., Taylor, Jeremy F., Allan, Mark F., Heaton, Michael P., O'Connell, Jeff, Moore, Stephen S., Smith, Timothy P. L., Sonstegard, Tad S. and Van Tassell, Curtis P. (2009). Development and Characterization of a High Density SNP Genotyping Assay for Cattle. PLoS ONE, 4 (4) e0005350, e5350. doi: 10.1371/journal.pone.0005350
Islam, K. K., Vinsky, M., Crews, R. E., Okine, E., Moore, S. S., Crews Jr., D. H. and Li, C. (2009). Association analyses of a SNP in the promoter of IGF1 with fat deposition and carcass merit traits in hybrid, Angus and Charolais beef cattle. Animal Genetics, 40 (5), 766-769. doi: 10.1111/j.1365-2052.2009.01912.x
Jin, Weiwu, Grant, Jason R., Stothard, Paul, Moore, Stephen S. and Guan, Le L. (2009). Characterization of bovine miRNAs by sequencing and bioinformatics analysis. BMC Molecular Biology, 10 (1) 93. doi: 10.1186/1471-2199-10-90
Moore, S. S. (2009). Editorial: The bovine genome sequence - Will it live up to the promise?. Journal of Animal Breeding and Genetics, 126 (4), 257-258. doi: 10.1111/j.1439-0388.2009.00830.x
Marques, E., Nkrumah, J. D., Sherman, E. L. and Moore, S. S. (2009). Polymorphisms in positional candidate genes on BTA14 and BTA26 affect carcass quality in beef cattle. Journal of Animal Science, 87 (8), 2475-2484. doi: 10.2527/jas.2008-1456
Kolbehdari, D., Wang, Z., Grant, J. R., Murdoch, B., Prasad, A., Xiu, Z., Marques, E., Stothard, P. and Moore, S. S. (2009). A whole genome scan to map QTL for milk production traits and somatic cell score in Canadian Holstein bulls. Journal of Animal Breeding and Genetics, 126 (3), 216-227. doi: 10.1111/j.1439-0388.2008.00793.x
Vrijheid, Martine, Armstrong, Bruce K., Bédard, Daniel, Brown, Julianne, Deltour, Isabelle, Iavarone, Ivano, Krewski, Daniel, Lagorio, Susanna, Moore, Stephen, Richardson, Lesley, Giles, Graham G., McBride, Mary, Parent, Marie-Elise, Siemiatycki, Jack and Cardis, Elisabeth (2009). Recall bias in the assessment of exposure to mobile phones. Journal of Exposure Science and Environmental Epidemiology, 19 (4), 369-381. doi: 10.1038/jes.2008.27
Gibbs, Richard A., Taylor, Jeremy F., Van Tassell, Curtis P., Barendse, William, Eversoie, Kallye A., Gill, Clare A., Green, Ronnie D., Hamernik, Debora L., Kappes, Steven M., Lien, Sigbjorn, Matukumalli, Lakshmi K., McEwan, John C., Nazareth, Lynne V., Schnabel, Robert D., Taylor, Jeremy F., Weinstock, George M., Wheeler, David A., Ajmone-Marsan, Paolo, Barendse, William, Boettcher, Paul J., Caetano, Alexandre R., Garcia, Jose Fernando, Hanotte, Olivier, Mariani, Paola, Skow, Loren C., Williams, John L., Caetano, Alexandre R., Diallo, Boubacar, Green, Ronnie D. ... Dodds, Ken G. (2009). Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science, 324 (5926), 528-532. doi: 10.1126/science.1167936
Elsik, Christine G., Tellam, Ross L., Worley, Kim C., Gibbs, Richard A., Muzny, Donna M., Weinstock, George M., Adelson, David L., Eichler, Evan E., Elnitski, Laura, Guigó, Roderic, Hamernik, Debora L., Kappes, Steve M., Lewin, Harris A., Lynn, David J., Nicholas, Frank W., Reymond, Alexandre, Rijnkels, Monique, Skow, Loren C., Zdobnov, Evgeny M., Schook, Lawrence, Womack, James, Alioto, Tyler, Antonarakis, Stylianos E., Astashyn, Alex, Chappie, Charles E., Chen, Hsiu-Chuan, Chrast, Jacqueline, Câmara, Francisco, Ermolaeva, Olga ... Zhao, Feng-Qi (2009). The genome sequence of taurine cattle: A window to ruminant biology and evolution. Science, 324 (5926), 522-528. doi: 10.1126/science.1169588
Ellis, J. L., Kebreab, E., Odongo, N. E., Beauchemin, K., McGinn, S., Nkrumah, J. D., Moore, S. S., Christopherson, R., Murdoch, G. K., McBride, B. W., Okine, E. K. and France, J. (2009). Modeling methane production from beef cattle using linear and nonlinear approaches. Journal of Animal Science, 87 (4), 1334-1345. doi: 10.2527/jas.2007-0725
Sherman, E. L., Nkrumah, J. D., Li, C., Bartusiak, R., Murdoch, B. and Moore, S. S. (2009). Fine mapping quantitative trait loci for feed intake and feed efficiency in beef cattle. Journal of Animal Science, 87 (1), 37-45. doi: 10.2527/jas.2008-0876
Khaniya, Bina, Almeida, Luciane, Basu, Urmila, Taniguchi, Masaaki, Williams, John L., Barreda, Daniel R., Moore, Stephen S. and Guan, Le Luo (2009). Microarray analysis of differentially expressed genes from peyer's patches of cattle orally challenged with bovine spongiform encephalopathy. Journal of Toxicology and Environmental Health - Part A: Current Issues, 72 (17-18), 1008-1013. doi: 10.1080/15287390903084199
Moore, S. S., Mujibi, F. D. and Sherman, E. L. (2009). Molecular basis for residual feed intake in beef cattle. Journal of animal science, 87 (14 Suppl). doi: 10.2527/jas.2008-1418
Wong, Michelle, Toth, Janie, Haney, Sandra, Tyshenko, Michael G., Darshan, Shalu, Krewski, Daniel, Leighton, Frederick A., Westaway, David, Moore, Stephen S., Ricketts, Maura and Cashman, Neil (2009). Prionet Canada: A network of centres of excellence for research into prions and prion diseases. Journal of Toxicology and Environmental Health - Part A: Current Issues, 72 (17-18), 1000-1007. doi: 10.1080/15287390903084108
Amaral, M. Elisabete J., Grant, Jason R., Riggs, Penny K., Stafuzza, Nedenia B., Filho, Edson A. Rodrigues, Goldammer, Tom, Weikard, Rosemarie, Brunner, Ronald M., Kochan, Kelli J., Greco, Anthony J., Jeong, Jooha, Cai, Zhipeng, Lin, Guohui, Prasad, Aparna, Kumar, Satish, Saradhi, G. Pardha, Mathew, Boby, Kumar, M. Aravind, Miziara, Melissa N., Mariani, Paola, Caetano, Alexandre R., Galvão, Stephan R., Tantia, Madhu S., Vijh, Ramesh K., Mishra, Bina, Bharani, S.T. Bharani, Pelai, Vanderlei A., Santana, Andre M., Fornitano, Larissa C. ... Womack, James E. (2008). A first generation whole genome RH map of the river buffalo with comparison to domestic cattle. BMC Genomics, 9 631. doi: 10.1186/1471-2164-9-631
Taniguchi, Masaaki, Guan, Le Luo, Basarab, John A., Dodson, Michael V. and Moore, Stephen S. (2008). Comparative analysis on gene expression profiles in cattle subcutaneous fat tissues. Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 3 (4), 251-256. doi: 10.1016/j.cbd.2008.06.002
Prasad, A., Schnabel, R. D., McKay, S. D., Murdoch, B., Stothard, P., Kolbehdari, D., Wang, Z., Taylor, J. F. and Moore, S. S. (2008). Linkage disequilibrium and signatures of selection on chromosomes 19 and 29 in beef and dairy cattle. Animal Genetics, 39 (6), 597-605. doi: 10.1111/j.1365-2052.2008.01772.x
Guan, Le Luo, Nkrumah, Joshua D., Basarab, John A. and Moore, Stephen S. (2008). Linkage of microbial ecology to phenotype: Correlation of rumen microbial ecology to cattle's feed efficiency. FEMS Microbiology Letters, 288 (1), 85-91. doi: 10.1111/j.1574-6968.2008.01343.x
Marques, Elisa, Schnabel, Robert D., Stothard, Paul, Kolbehdari, Davood, Wang, Zhiquan, Taylor, Jeremy F. and Moore, Stephen S. (2008). High density linkage disequilibrium maps of chromosome 14 in Holstein and Angus cattle. BMC Genetics, 9 (1) 45. doi: 10.1186/1471-2156-9-45
Sherman, E. L., Nkrumah, J. D., Murdoch, B. M. and Moore, S. S. (2008). Identification of polymorphisms influencing feed intake and efficiency in beef cattle. Animal Genetics, 39 (3), 225-231. doi: 10.1111/j.1365-2052.2008.01704.x
McKay, Stephanie D., Schnabel, Robert D., Murdoch, Brenda M., Matukumalli, Lakshmi K., Aerts, Jan, Coppieters, Wouter, Crews, Denny, Neto, Emmanuel Dias, Gill, Clare A., Gao, Chuan, Mannen, Hideyuki, Wang, Zhiquan, Van Tassell, Curt P., Williams, John L., Taylor, Jeremy F. and Moore, Stephen S. (2008). An assessment of population structure in eight breeds of cattle using a whole genome SNP panel. BMC Genetics, 9 (1) 37. doi: 10.1186/1471-2156-9-37
Fernyhough, M. E., Hausman, G. J., Guan, L. L., Okine, E., Moore, S. S. and Dodson, M. V. (2008). Mature adipocytes may be a source of stem cells for tissue engineering. Biochemical and Biophysical Research Communications, 368 (3), 455-457. doi: 10.1016/j.bbrc.2008.01.113
Van Tassell, Curtis P., Smith, Timothy P. L., Matukumalli, Lakshmi K., Taylor, Jeremy F., Schnabel, Robert D., Lawley, Cynthia Taylor, Haudenschild, Christian D., Moore, Stephen S., Warren, Wesley C. and Sonstegard, Tad S. (2008). SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries. Nature Methods, 5 (3), 247-252. doi: 10.1038/nmeth.1185
Taniguchi, Masaaki, Guan, Le Luo, Zhang, Bing, Dodson, Michael V., Okine, Erasmus and Moore, Stephen S. (2008). Gene expression patterns of bovine perimuscular preadipocytes during adipogenesis. Biochemical and Biophysical Research Communications, 366 (2), 346-351. doi: 10.1016/j.bbrc.2007.11.111
Davis, G. P., Moore, S. S., Drinkwater, R. D., Shorthose, W. R., Loxton, I. D., Barendse, W. and Hetzel, D. J. S. (2008). QTL for meat tenderness in the M. longissimus lumborum of cattle. Animal Genetics, 39 (1), 40-45. doi: 10.1111/j.1365-2052.2007.01677.x
Taniguchi, Masaaki, Guan, Le Luo, Zhang, Bing, Dodson, Michael V., Okine, Erasmus and Moore, Stephen S. (2008). Adipogenesis of bovine perimuscular preadipocytes. Biochemical and Biophysical Research Communications, 366 (1), 54-59. doi: 10.1016/j.bbrc.2007.11.110
Kolbehdari, D., Wang, Z., Grant, J. R., Murdoch, B., Prasad, A., Xiu, Z., Marques, E., Stothard, P. and Moore, S. S. (2008). A whole-genome scan to map quantitative trait loci for conformation and functional traits in Canadian holstein bulls. Journal of Dairy Science, 91 (7), 2844-2856. doi: 10.3168/jds.2007-0585
Sherman, E. L., Nkrumah, J. D., Murdoch, B. M., Li, C., Wang, Z., Fu, A. and Moore, S. S. (2008). Polymorphisms and haplotypes in the bovine neuropeptide Y, growth hormone receptor, ghrelin, insulin-like growth factor 2, and uncoupling proteins 2 and 3 genes and their associations with measures of growth, performance, feed efficiency, and carcass merit in beef cattle. Journal of Animal Science, 86 (1), 1-16. doi: 10.2527/jas.2006-799
Snelling, Warren M., Chiu, Readman, Schein, Jacqueline E., Hobbs, Matthew, Abbey, Colette A., Adelson, David L., Aerts, Jan, Bennett, Gary L., Bosdet, Ian E., Boussaha, Mekki, Brauning, Rudiger, Caetano, Alexandre R., Costa, Marcos M., Crawford, Allan M., Dalrymple, Brian P., Eggen, André, Everts-van der Wind, Annelie, Floriot, Sandrine, Gautier, Mathieu, Gill, Clare A., Green, Ronnie D., Holt, Robert, Jann, Oliver, Jones, Steven J.M., Kappes, Steven M., Keele, John W., de Jong, Pieter J., Larkin, Denis M., Lewin, Harris A. ... Zhao, Shaying (2007). A physical map of the bovine genome. Genome Biology, 8 (8) R165. doi: 10.1186/gb-2007-8-8-r165
Nkrumah, J. D., Sherman, E. L., Li, C., Marques, E., Crews Jr., D. H., Bartusiak, R., Murdoch, B., Wang, Z., Basarab, J. A. and Moore, S. S. (2007). Primary genome scan to identify putative quantitative trait loci for feedlot growth rate, feed intake, and feed efficiency of beef cattle. Journal of Animal Science, 85 (12), 3170-3181. doi: 10.2527/jas.2007-0234
McKay, Stephanie D., Schnabel, Robert D., Murdoch, Brenda M., Matukumalli, Lakshmi K., Aerts, Jan, Coppieters, Wouter, Crews, Denny, Neto, Emmanuel, Gill, Clare A., Gao, Chuan, Mannen, Hideyuki, Stothard, Paul, Wang, Zhiquan, Van Tassell, Curt P., Williams, John L., Taylor, Jeremy F. and Moore, Stephen S. (2007). Whole genome linkage disequilibrium maps in cattle. BMC Genetics, 8 (1) 74. doi: 10.1186/1471-2156-8-74
Nkrumah, J. D., Basarab, J. A., Wang, Z., Li, C., Price, M. A., Okine, E. K., Crews Jr., D. H. and Moore, Stephen S. (2007). Genetic and phenotypic relationships of feed intake and measures of efficiency with growth and carcass merit of beef cattle. Journal of Animal Science, 85 (10), 2711-2720. doi: 10.2527/jas.2006-767
Nkrumah, J. D., Crews Jr., D. H., Basarab, J. A., Price, M. A., Okine, E. K., Wang, Z., Li, C. and Moore, Stephen S. (2007). Genetic and phenotypic relationships of feeding behavior and temperament with performance, feed efficiency, ultrasound, and carcass merit of beef cattle. Journal of Animal Science, 85 (10), 2382-2390. doi: 10.2527/jas.2006-657
Prasad, Aparna, Schiex, Thomas, McKay, Stephanie, Murdoch, Brenda, Wang, Zhiquan, Womack, James E., Stothard, Paul and Moore, Stephen S. (2007). High resolution radiation hybrid maps of bovine chromosomes 19 and 29: Comparison with the bovine genome sequence assembly. BMC Genomics, 8 (1) 310. doi: 10.1186/1471-2164-8-310
Nkrumah, J. D., Keisler, D. H., Crews Jr., D. H., Basarab, J. A., Wang, Z., Li, C., Price, M. A., Okine, E. K. and Moore, S. S. (2007). Genetic and phenotypic relationships of serum leptin concentration with performance, efficiency of gain, and carcass merit of feedlot cattle. Journal of Animal Science, 85 (9), 2147-2155. doi: 10.2527/jas.2006-764
Marques, Elisa, de Givry, Simon, Stothard, Paul, Murdoch, Brenda, Wang, Zhiquan, Womack, James and Moore, Stephen S. (2007). A high resolution radiation hybrid map of bovine chromosome 14 identifies scaffold rearrangement in the latest bovine assembly. BMC Genomics, 8 (1) 254. doi: 10.1186/1471-2164-8-254
McKay, S. D., Schnabel, R. D., Murdoch, B. M., Aerts, J., Gill, C. A., Gao, C., Li, C., Matukumalli, L. K., Stothard, P., Wang, Z., Van Tassell, C. P., Williams, J. L., Taylor, J. F. and Moore, S. S. (2007). Construction of bovine whole-genome radiation hybrid and linkage maps using high-throughput genotyping. Animal Genetics, 38 (2), 120-125. doi: 10.1111/j.1365-2052.2006.01564.x
Iqbal, Muhammad, Navabi, Alireza, Salmon, Donald F., Yang, Rong-Cai, Murdoch, Brenda M., Moore, Steve S. and Spaner, Dean (2007). Genetic analysis of flowering and maturity time in high latitude spring wheat: Genetic analysis of earliness in spring wheat. Euphytica, 154 (1-2), 207-218. doi: 10.1007/s10681-006-9289-y
Jann, Oliver C., Aerts, Jan, Jones, Michelle, Hastings, Nicola, Law, Andy, McKay, Stephanie, Marques, Elisa, Prasad, Aparna, Yu, Jody, Moore, Stephen, Floriot, Sandrine, Mahé, Marie-Françoise, Eggen, André, Silveri, Licia, Negrini, Riccardo, Milanesi, Elisabetta, Ajmone-Marsan, Paolo, Valentini, Alessio, Marchitelli, Cinzia, Savarese, Maria C., Janitz, Michal, Herwig, Ralf, Hennig, Steffen, Gorni, Chiara, Connor, Erin E., Sonstegard, Tad S., Smith, Timothy, Drögemüller, Cord and Williams, John L. (2006). A second generation radiation hybrid map to aid the assembly of the bovine genome sequence. BMC Genomics, 7 (1) 283. doi: 10.1186/1471-2164-7-283
Wang, Z., Nkrumah, J. D., Li, C., Basarab, J. A., Goonewardene, L. A., Okine, E. K., Crews Jr., D. H. and Moore, S. S. (2006). Test duration for growth, feed intake, and feed efficiency in beef cattle using the GrowSafe System. Journal of Animal Science, 84 (9), 2289-2298. doi: 10.2527/jas.2005-715
Nkrumah, J. D., Okine, E. K., Mathison, G. W., Schmid, K., Li, C., Basarab, J. A., Price, M. A., Wang, Z. and Moore, S. S. (2006). Relationships of feedlot feed efficiency, performance, and feeding behavior with metabolic rate, methane production, and energy partitioning in beef cattle. Journal of Animal Science, 84 (1), 145-153.
Schenkel, F. S., Miller, S. P., Ye, X., Moore, S. S., Nkrumah, J. D., Li, C., Yu, J., Mandell, I. B., Wilton, J. W. and Williams, J. L. (2005). Association of single nucleotide polymorphisms in the leptin gene with carcass and meat quality traits of beef cattle. Journal of Animal Science, 83 (9), 2009-2020. doi: 10.2527/2005.8392009x
Valle, E., Moore, S. S., Jann, O., Williams, J. L., Crews Jr., D. H. and Benkel, B. F. (2005). The bovine cocaine and amphetamine-regulated transcript locus: Gene characterization and SNP discovery. Animal Genetics, 36 (1), 74-75. doi: 10.1111/j.1365-2052.2004.01218.x
Nkrumah, J. D., Li, C., Yu, J., Hansen, C., Keisler, D. H. and Moore, S. S. (2005). Polymorphisms in the bovine leptin promoter associated with serum leptin concentration, growth, feed intake, feeding behavior, and measures of carcass merit. Journal of Animal Science, 83 (1), 20-28. doi: 10.2527/2005.83120x
Kneeland, J., Li, C., Basarabt, J., Snelling, W. M., Benkel, B., Murdoch, B., Hansen, C. and Moore, S. S. (2004). Identification and fine mapping of quantitative trait loci for growth traits on bovine chromosomes 2, 6, 14, 19, 21, and 23 within one commercial line of Bos taurus. Journal of Animal Science, 82 (12), 3405-3414.
Nkrumah, J. D., Basarab, J. A., Price, M. A., Okine, E. K., Ammoura, A., Guercio, S., Hansen, C., Li, C., Benkel, B., Murdoch, B. and Moore, S. S. (2004). Different measures of energetic efficiency and their phenotypic relationships with growth, feed intake, and ultrasound and carcass merit in hybrid cattle. Journal of Animal Science, 82 (8), 2451-2459.
Hansen, Christiane, Fu, Anna, Meng, Yan, Okine, Erasmus, Hawken, Rachel, Barris, Wes, Li, Changxi and Moore, Stephen S. (2004). Gene expression profiling of the bovine gastrointestinal tract. Genome, 47 (4), 639-649. doi: 10.1139/G04-030
Valle, E., Habermann, F. A., Moore, S. S., Crews, D. H. and Benkel, B. F. (2004). Genomic localization and SNP discovery in the bovine melanocortin receptor 4 gene (MC4R). Animal Genetics, 35 (4), 351-352. doi: 10.1111/j.1365-2052.2004.01148.x
Murdoch, B., Fu, A., Meng, Y., Li, C., Hansen, C., Snelling, W. M. and Moore, S. S. (2004). Assignment of the SIAT4A gene to bovine chromosome 14 by linkage mapping of an associated microsatellite. Animal Genetics, 35 (2), 146-147. doi: 10.1111/j.1365-2052.2004.01086.x
Li, C., Basarab, J., Snelling, W. M., Benkel, B., Kneeland, J., Murdoch, B., Hansen, C. and Moore, S. S. (2004). Identification and fine mapping of quantitative trait loci for backfat on bovine chromosomes 2, 5, 6, 19, 21, and 23 in a commercial line of Bos taurus. Journal of Animal Science, 82 (4), 967-972.
Murdoch, B., Fu, A., Meng, Y., Li, C., Hansen, C., Snelling, W. M. and Moore, S. S. (2004). Identification of three microsatellite loci on bovine chromosome 19. Animal Genetics, 35 (2), 145-146. doi: 10.1111/j.1365-2052.2004.01087.x
Li, C., Basarab, J., Snelling, W. M., Benkel, B., Murdoch, B., Hansen, C. and Moore, S. S. (2004). Assessment of positional candidate genes myf5 and igf1 for growth on bovine chromosome 5 in commercial lines of Bos taurus. Journal of Animal Science, 82 (1), 1-7.
Nkrumah, J. D., Li, C., Basarab, J. B., Guercio, S., Meng, Y., Murdoch, B., Hansen, C. and Moore, S. S. (2004). Association of a single nucleotide polymorphism in the bovine leptin gene with feed intake, feed efficiency, growth, feeding behaviour, carcass quality and body composition. Canadian Journal of Animal Science, 84 (2), 211-219. doi: 10.4141/A03-033
Hansen, C., Fu, A., Li, C., Dixon, W. T., Christopherson, R. and Moore, S. S. (2004). Global gene expression patterns spanning 3T3-L1 preadipocyte differentiation. Canadian Journal of Animal Science, 84 (3), 367-376. doi: 10.4141/A03-120
Moore, S. S., Hansen, C., Williams, J. L., Fu, A., Meng, Y., Li, C., Zhang, Y., Urquhart, B. S.D., Marra, M., Schein, J., Benkel, B., De Jong, P. J., Osoegawa, K., Kirkpatrick, B. W. and Gill, C. A. (2003). A comparative map of bovine chromosome 19 based on a combination of mapping on a bacterial artificial chromosome scaffold map, a whole genome radiation hybrid panel and the human draft sequence. Cytogenetic and Genome Research, 102 (1-4), 32-38. doi: 10.1159/000075721
Moore, S. S., Li, C., Basarab, J., Snelling, W. M., Kneeland, J., Murdoch, B., Hansen, C. and Benkel, B. (2003). Fine mapping of quantitative trait loci and assessment of positional candidate genes for backfat on bovine chromosome 14 in a commercial line of Bos taurus. Journal of Animal Science, 81 (8), 1919-1925.
Li, Yutao, Byrne, Keren, Miggiano, Emanuela, Whan, Vicki, Moore, Stephen, Keys, Sandy, Crocos, Peter, Preston, Nigel and Lehnert, Sigrid (2003). Genetic mapping of the kuruma prawn Penaeus japonicus using AFLP markers. Aquaculture, 219 (1-4), 143-156. doi: 10.1016/S0044-8486(02)00355-1
Byrne, K., Johnson, S., Barendse, W. and Moore, S. S. (2002). CSY234: a SINE-associated genetic and physical marker on bovine chromosome X. Animal Genetics, 33 (2), 163-164. doi: 10.1046/j.1365-2052.2002.0831f.x
Wilson, Kate, Li, Yutao, Whan, Vicki, Lehnert, Sigrid, Byrne, Keren, Moore, Stephen, Ballment, Elizabeth, Fayazi, Zahra, Swan, Jennifer, Kenway, Matthew and Benzie, John (2002). Genetic mapping of the black tiger shrimp Penaeus monodon with amplified fragment length polymorphism. Aquaculture, 204 (3-4), 297-309. doi: 10.1016/S0044-8486(01)00842-0
Li, C., Basarab, J., Snelling, W. M., Benkel, B., Murdoch, B. and Moore, S. S. (2002). The identification of common haplotypes on bovine chromosome 5 within commercial lines of Bos taurus and their associations with growth traits. Journal of Animal Science, 80 (5), 1187-1194. doi: 10.2527/2002.8051187x
Barker, J. S.F., Tan, S. G., Moore, S. S., Mukherjee, T. K., Matheson, J. L. and Selvaraj, O. S. (2001). Genetic variation within and relationships among populations of Asian goats (Capra hircus). Journal of Animal Breeding and Genetics, 118 (4), 213-233. doi: 10.1046/j.1439-0388.2001.00296.x
Maddox, Julian F., Davies, Kizanne P., Crawford, Allan M., Hulme, Dennis J., Vaiman, Daniel, Cribiu, Edmond P., Freking, Bradley A., Beh, Ken J., Cockett, Noelle E., Kang, Nina, Riffkin, Christopher D., Drinkwater, Roger, Moore, Stephen S., Dodds, Ken G., Lumsden, Joanne M., Van Stijn, Tracey C., Phua, Sin H., Adelson, David L., Burkin, Heather R., Broom, Judith E., Buitkamp, Johannes, Cambridge, Lisa, Cushwa, William T., Gerard, Emily, Galloway, Susan M., Harrison, Blair, Hawken, Rachel J., Hiendleder, Stefan, Henry, Hannah M. ... Van Hest, Beryl (2001). An enhanced linkage map of the sheep genome comprising more than 1000 loci. Genome Research, 11 (7), 1275-1289. doi: 10.1101/gr.GR-1350R
Moore, S. S., Byrne, K., Johnson, S. E., Kata, S. and Womack, J. E. (2001). Physical mapping of CSF2RA, ANT3 and STS on the pseudoautosomal region of bovine chromosome X. Animal Genetics, 32 (2), 102-104. doi: 10.1046/j.1365-2052.2001.00740.x
Wang, YH, McWilliam, SM, Barendse, W, Kata, SR, Womack, JE, Moore, SS and Lehnert, SA (2001). Mapping of 12 bovine ribosomal protein genes using a bovine radiation hybrid panel. Animal Genetics, 32 (5), 269-273. doi: 10.1046/j.1365-2052.2001.00791.x
Burrow, HM, Moore, SS, Johnston, DJ, Barendse, W and Bindon, BM (2001). Quantitative and molecular genetic influences on properties of beef: A review. Australian Journal of Experimental Agriculture, 41 (7), 893-919. doi: 10.1071/EA00015
Baker, N., Byrne, K., Moore, S. and Mather, P. (2000). Characterization of microsatellite loci in the redclaw crayfish, Cherax quadricarinatus. Molecular Ecology, 9 (4), 494-495. doi: 10.1046/j.1365-294X.2000.00871-4.x
Whan, V. A., Wilson, K. J. and Moore, S. S. (2000). Two polymorphic microsatellite markers from novel Penaeus monodon ESTs. Animal Genetics, 31 (2), 143-144.
Bierne, N., Lehnert, S. A., Bédier, E., Bonhomme, F. and Moore, S. S. (2000). Screening for intron-length polymorphisms in penaeid shrimps using exon-primed intron-crossing (EPIC)-PCR. Molecular Ecology, 9 (2), 233-235. doi: 10.1046/j.1365-294X.2000.00842.x
Hetzel, David J.S., Crocos, Peter J., Davis, Gerard P., Moore, Steven S. and Preston, Nigel C. (2000). Response to selection and heritability for growth in the Khuruma prawn, Penaeus japonicus. Aquaculture, 181 (3-4), 215-223. doi: 10.1016/S0044-8486(99)00237-9
Byrne, Keren A., Lehnert, Sigrid A., Johnson, Samuel E. and Moore, Stephen S. (1999). Isolation of a cDNA encoding a putative cellulase in the red claw crayfish Cherax quadricarinatus. Gene, 239 (2), 317-324. doi: 10.1016/S0378-1119(99)00396-0
Lehnert, Sigrid A., Wilson, Kate J., Byrne, Keren and Moore, Stephen S. (1999). Tissue-specific expressed sequence tags from the black tiger shrimp Penaeus monodon. Marine Biotechnology, 1 (5), 465-476. doi: 10.1007/PL00011803
Moore, S. S., Hale, P. and Byrne, K. (1998). NCAM: A polymorphic microsatellite locus conserved across eutherian mammal species. Animal Genetics, 29 (1), 33-36. doi: 10.1046/j.1365-2052.1998.00234.x
Moore, S. S., Byrne, K. and Malcolm, N. (1997). Three cDNA-derived bovine dinucleotide repeat polymorphisms: CSSME069, CSSME070 and CSSME076. Animal Genetics, 28 (5), 376-377.
Barker, J. S. F., Moore, S. S., Hetzel, D. J.S., Evans, D., Tan, S. G. and Byrne, K. (1997). Genetic diversity of Asian water buffalo (Bubalus bubalis): Microsatellite variation and a comparison with protein-coding loci. Animal Genetics, 28 (2), 103-115. doi: 10.1111/j.1365-2052.1997.00085.x
Barendse, W., Vaiman, D., Kemp, S. J., Sugimoto, Y., Armitage, S. M., Williams, J. L., Sun, H. S., Eggen, A., Agaba, M., Aleyasin, S. A., Band, M., Bishop, M. D., Buitkamp, J., Byrne, K., Collins, F., Cooper, L., Coppettiers, W., Denys, B., Drinkwater, R. D., Easterday, K., Elduque, C., Ennis, S., Erhardt, G., Ferretti, L., Flavin, N., Gao, Q., Georges, M., Gurung, R., Harlizius, B. ... Zaragoza, P. (1997). A medium-density genetic linkage map of the bovine genome. Mammalian Genome, 8 (1), 21-28. doi: 10.1007/s003359900340
Andersson, L., Archibald, A., Ashburner, M., Audun, S., Barendse, W., Bitgood, J., Bottema, C., Broad, T., Brown, S., Burt, D., Charlier, C., Copeland, N., Davis, S., Davisson, M., Edwards, J., Eggen, A., Elgar, G., Eppig, J. T., Franklin, I., Grewe, P., Gill, T., Graves, J. A. M., Hawken, R., Hetzel, J., Hilyard, A., Jacob, H., Jaswinska, L., Jenkins, N., Kunz, H. ... Womack, J. (1996). Comparative genome organization of vertebrates. Mammalian Genome, 7 (10), 717-734. doi: 10.1007/s003359900222
Byrne K., Barendse W. and Moore S.S. (1996). Dinucleotide polymorphism at the bovine potassium voltage gated channel locus (KCNA4). Animal Genetics, 27 (6), 437-437. doi: 10.1111/j.1365-2052.1996.tb00517.x
Moore, S. S., Evans, D., Byrne, K., Barker, J. S. F., Tan, S. G., Vankan, D. M. and Hetzel, D.J.S. (1995). A set of polymorphic DNA microsatellites useful in swamp and river buffalo (Bulbalus bulbalis). Animal genetics, 26 (5), 355-359. doi: 10.1111/j.1365-2052.1995.tb02674.x
Johnson S.E., Moore S.S., MacKinnon R., Hetzel D.J.S. and Barendse W. (1995). The cosmid CSSM25 assigns syntenic group U2 to bovine Chromosome 9 and is localized to ovine Chromosome 8. Mammalian Genome, 6 (8), 529-531. doi: 10.1007/BF00356170
Barendse, W., Armitage, S. M., Kossarek, L. M., Shalom, A., Kirkpatrick, B. W., Ryan, A. M., Clayton, D., Li, L., Neibergs, H. L., Zhang, N., Grosse, W. M., Weiss, J., Creighton, P., McCarthy, F., Ron, M., Teale, A. J., Fries, R., McGraw, R. A., Moore, S. S., Georges, M., Soller, M., Womack, J. E. and Hetzel, D. J. S. (1994). A genetic linkage map of the bovine genome. Nature Genetics, 6 (3), 227-235. doi: 10.1038/ng0394-227
Moore, SS, Byrne, K, Berger, KT, Barendse, W, McCarthy, F, Womack, JE and Hetzel, Djs (1994). Characterization of 65 bovine microsatellites. Mammalian Genome, 5 (2), 84-90. doi: 10.1007/BF00292333
Moore S.S. and Vankan D. (1994). The application of DNA fingerprinting to parentage verification in cattle.. Australasian biotechnology, 4 (2), 107-108.
Barendse, William, Armitage, Sharon M., Ryan, Anne M., Moore, Stephen S., Clayton, Daniel, Georges, Michel, Womack, James E. and Hetzel, Jay (1993). A genetic map of DNA loci on bovine chromosome 1. Genomics, 18 (3), 602-608. doi: 10.1016/S0888-7543(05)80362-3
Moore S.S. and Byrne K. (1993). Dinucleotide polymorphism at the bovine histamine H1 receptor locus.. Animal Genetics, 24 (1), 72-72. doi: 10.1111/j.1365-2052.1993.tb00930.x
Moore S.S. and Byrne K. (1993). Dinucleotide polymorphism at the bovine calmodulin independent adenylcyclase locus.. Animal Genetics, 24 (2), 150-150. doi: 10.1111/j.1365-2052.1993.tb00278.x
Georges, Michel, Drinkwater, Roger, King, Tracey, Mishra, Anuradha, Moore, Stephen S., Nielsen, Dahlia, Sargeant, Leslie S., Sorensen, Anita, Steele, Michael R., Zhao, Xuyun, Womack, James E. and Hetzel, Jay (1993). Microsatellite mapping of a gene affecting horn development in Bos taurus. Nature Genetics, 4 (2), 206-210. doi: 10.1038/ng0693-206
Barendse, William, Armitage, Sharon M., Kirkpatrick, Brian W., Moore, Stephen S., Georges, Michel, Womack, James E. and Hetzel, Jay (1993). A genetic map of index DNA loci on bovine chromosome 21. Genomics, 18 (3), 598-601. doi: 10.1016/S0888-7543(05)80361-1
Moore S.S., Barendse W., Berger K.T., Armitage S.M. and Hetzel D.J. (1992). Bovine and ovine DNA microsatellites from the EMBL and GENBANK databases.. Animal Genetics, 23 (5), 463-467. doi: 10.1111/j.1365-2052.1992.tb02168.x
Moore S.S. and Byrne K. (1992). Dinucleotide polymorphism at the bovine brain ribonuclease locus.. Animal Genetics, 23 (6), 574-574. doi: 10.1111/j.1365-2052.1992.tb00188.x
Moore S.S. (1992). Dinucleotide polymorphism at the bovine beta-globin locus (HBB).. Animal Genetics, 23 (5), 479-479. doi: 10.1111/j.1365-2052.1992.tb02174.x
Moore, S. S., Sargeant, L. L., King, T. J., Mattick, J. S., Georges, M. and Hetzel, D. J.S. (1991). The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. Genomics, 10 (3), 654-660. doi: 10.1016/0888-7543(91)90448-N
Conference Papers
Forutan, M., Vander Jagt, C.J., Ross, E., Chamberlain, A. J., Mason, B., Nguyen, L., Moore, S., Garner, J. B., Xiang, R. and Hayes, B. J. (2021). Genome wide analysis of bovine enhancers and promoters across developmental stages in liver. 24th Association for the Advancement of Animal Breeding and Genetics Conference, On-line with local hubs in Australia, 2-4 November 2021. Armidale, NSW Australia: Association for the Advancement of Animal Breeding and Genetics.
Kho, Elise, Fernandes, Jill, Kotze, Andrew, Lord, Maggy, Fox, Glen, Beasley, Anne, Moore, Stephen and James, Peter (2020). Shining a light on Haemonchus contortus in sheep. 3rd International Tropical Agriculture Conference (TROPAG 2019), Brisbane, Australia, 11–13 November 2019. Basel, Switzerland: MDPI. doi: 10.3390/proceedings2019036138
Nguyen, Loan T., Reverter, Antonio, Cánovas, Angela, Porto-Neto, L.R., Venus, Bronwyn, Islas-Trejo, Alma, Lehnert, Sigrid A., Medrano, Juan F., Thomas, Milton G., Moore, Stephen S. and Fortes, Marina R.S. (2019). Pre- and post-puberty co-expression gene networks from RNA-sequencing of Brahman heifers. Proceedings of the Association for the Advancement of Animal Breeding and Genetics, Armidale, NSW, Australia, 27 October - 1 November 2019.
Nguyen, L. T., Reverter-Gomez, A., Canovas, A., Venus, B., Islas-Trejo, A., Lehnert, S. A., Medrano, J. F., Moore, S. S. and Fortes, M. R. (2016). Liver transcriptome from pre versus post-pubertal Brahman heifers. Animal Genomes (FAANG) ASAS-ISAG Joint Symposium, Salt Lake City, UT United States, 23 July 2016. Cary, NC United States: Oxford University Press. doi: 10.1093/ansci/94.supplement4.20
Kelly, M., Thompson, J. M., Porto-Neto, L. R., Lyons, R. E. and Moore, S. S. (2015). Using hump height to estimate Bos indicus content in the MSA beef grading model which predicts eating quality. Association for the Advancement of Animal Breeding and Genetics Conference, Lorne, VIC, Australia, 28-30 September 2015. Bundoora, VIC, Australia: Association for the Advancement of Animal Breeding and Genetics.
Moore, Stephen S. and Kelly, Matthew (2014). The development and application of genomics in Australian tropically adapted cattle. V International Symposium and IX Meeting of Genetics and Breeding, Universidade Federal de Vicosa, 6-8 November 2014. Brazil: SIGM.
Miar, Y., Plastow, G. S., Moore, S. S., Manafiazar, G., Charagu, P., Kemp, R. A., van Haandel, B., Huisman, A. E., Zhang, C. Y., McKay, R. M., Bruce, H. L. and Wang, Z. (2014). Genetic and phenotypic parameters for carcass and meat quality traits in commercial crossbred pigs. Beef Species Symposium and Forages and Pastures Symposium, held at the Joint Annual Meeting of the American Dairy Science Association and American Society of Animal Science 2013, Indianapolis, IN, United States, 8-12 July 2013. Champaign, IL, United States: American Society of Animal Science. doi: 10.2527/jas.2014-7685
Crispim, Aline Camporez, Kelly, Matthew J., Silva, Fabyano F., Fortes, Marina R. S., Guimaraes, Simone E. F., Lopes, Paolo S. and Moore, Stephen S. (2014). Genome Wide Association for growth curve parameters in Brahman cattle. 10th World Congress of Genetics Applied to Livestock Production, Vancouver, 2014.
Akanno, E. C., Plastow, G., Woodward, B. W., Bauck, S., Okut, H., Wu, X.-L., Sun, C., Aalhus, J. L., Moore, S. S., Miller, S. P., Wang, Z. and Basarab, J. A. (2014). Reliability of molecular breeding values for Warner-Bratzler shear force and carcass traits of beef cattle - an independent validation study. Beef Species Symposium and Forages and Pastures Symposium, held at the Joint Annual Meeting of the American Dairy Science Association and American Society of Animal Science 2013, Indianapolis, IN, United States, 8-12 July 2013. Champaign, IL, United States: American Society of Animal Science. doi: 10.2527/jas.2013-7374
Kelly, M., Fortes, M. R. S. and Moore, S. S. (2013). Accuracy of imputation in a population of tropical composite cattle with particular emphasis on the use of allelic R2 as a quality control metric. AAABG 2013: 20th Conference of the Association for the Advancement of Animal Breeding and Genetics, Napier, New Zealand, 20-23 October, 2013. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics.
Kelly, M. J., Sargolzaei, M., Schenkel, F. S., Wang, Z., Stothard, P., Moore, S. S. and Miller, S. P. (2009). Comparison of linkage disequilibrium decay between a multi-breed beef herd and purebred Angus, Piedmontese and Holstein cattle. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Moore, Stephen S. and Hansen, Christiane (2003). Genomics: Delivering added value to the beef industry?. IP Publishing Ltd. doi: 10.5367/000000003322740586
Moore, Stephen S., Whan, Vicki, Davis, Gerard P., Byrne, Keren, Hetzel, David J.S. and Preston, Nigel (1999). The development and application of genetic markers for the Kuruma prawn Penaeus japonicus. Sixth International Symposium on Genetics in Aquaculture, Scotland, 22–28 June 1997. Amsterdam, Netherlands : Elsevier. doi: 10.1016/S0044-8486(98)00461-X
Data Collection
Moore, Stephen (2014). Beef Cattle Genomics. The University of Queensland. (Dataset) doi: 10.48610/8462192