Dr Cushla Metcalfe
Senior Research Assistant
Queensland Alliance for Agriculture and Food Innovation
Publications
Journal Articles
Healey, A. L., Garsmeur, O., Lovell, J. T., Shengquiang, S., Sreedasyam, A., Jenkins, J., Plott, C. B., Piperidis, N., Pompidor, N., Llaca, V., Metcalfe, C. J., Doležel, J., Cápal, P., Carlson, J. W., Hoarau, J. Y., Hervouet, C., Zini, C., Dievart, A., Lipzen, A., Williams, M., Boston, L. B., Webber, J., Keymanesh, K., Tejomurthula, S., Rajasekar, S., Suchecki, R., Furtado, A., May, G., Parakkal, P. ... D’Hont, A. (2024). The complex polyploid genome architecture of sugarcane. Nature, 628 (8009), 1-7. doi: 10.1038/s41586-024-07231-4
Castellanos-Gell, Jessy, Robainas-Barcia, Aymée, Pina-Amargós, Fabián, Chevalier-Monteagudo, Pedro, Metcalfe, Cushla, Molina, Wagner Franco, Casane, Didier and García-Machado, Erik (2016). Genetic diversity of reef fishes around Cuba: a multispecies assessment. Marine Biology, 163 (7) 165. doi: 10.1007/s00227-016-2935-6
Mies, Miguel, Van Sluys, M. A., Metcalfe, C. J. and Sumida, P. Y. G. (2016). Molecular evidence of symbiotic activity between Symbiodinium and Tridacna maxima larvae. Symbiosis, 72 (1), 13-22. doi: 10.1007/s13199-016-0433-8
Ponce de León, José Luis, León, Gunnary, Rodríguez, Rodet, Metcalfe, Cushla J., Hernández, Damir, Casane, Didier and García-Machado, Erik (2014). Phylogeography of Cuban Rivulus: Evidence for allopatric speciation and secondary dispersal across a marine barrier. Molecular Phylogenetics and Evolution, 79, 404-414. doi: 10.1016/j.ympev.2014.07.007
de Setta, Nathalia, Monteiro-Vitorello, Cláudia Barros, Metcalfe, Cushla Jane, Cruz, Guilherme Marcelo Queiroga, Del Bem, Luiz Eduardo, Vicentini, Renato, Nogueira, Fábio Tebaldi Silveira, Campos, Roberta Alvares, Nunes, Sideny Lima, Turrini, Paula Cristina Gasperazzo, Vieira, Andreia Prata, Ochoa Cruz, Edgar Andrés, Corrêa, Tatiana Caroline Silveira, Hotta, Carlos Takeshi, de Mello Varani, Alessandro, Vautrin, Sonia, da Trindade, Adilson Silva, de Mendonça Vilela, Mariane, Lembke, Carolina Gimiliani, Sato, Paloma Mieko, de Andrade, Rodrigo Fandino, Nishiyama, Milton Yutaka, Cardoso-Silva, Claudio Benicio, Scortecci, Katia Castanho, Garcia, Antônio Augusto Franco, Carneiro, Monalisa Sampaio, Kim, Changsoo, Paterson, Andrew H, Bergès, Hélène ... Van Sluys, Marie-Anne (2014). Building the sugarcane genome for biotechnology and identifying evolutionary trends. BMC Genomics, 15 (1) 540. doi: 10.1186/1471-2164-15-540
Metcalfe, Cushla J and Casane, Didier (2014). Modular organization and reticulate evolution of the ORF1 of Jockey superfamily transposable elements. Mobile DNA, 5 (1) 19, 19. doi: 10.1186/1759-8753-5-19
Metcalfe, C. J., Filee, J., Germon, I., Joss, J. and Casane, D. (2012). Evolution of the Australian Lungfish (Neoceratodus forsteri) Genome: A Major Role for CR1 and L2 LINE Elements. Molecular Biology and Evolution, 29 (11), 3529-3539. doi: 10.1093/molbev/mss159
Potter, Sally, Cooper, Steven J.B., Metcalfe, Cushla J., Taggart, David A. and Eldridge, Mark D.B. (2012). Phylogenetic relationships of rock-wallabies, Petrogale (Marsupialia: Macropodidae) and their biogeographic history within Australia. Molecular Phylogenetics and Evolution, 62 (2), 640-652. doi: 10.1016/j.ympev.2011.11.005
García-Machado, Erik, Hernández, Damir, García-Debrás, Alfredo, Chevalier-Monteagudo, Pedro, Metcalfe, Cushla, Bernatchez, Louis and Casane, Didier (2011). Molecular phylogeny and phylogeography of the Cuban cave-fishes of the genus Lucifuga: Evidence for cryptic allopatric diversity. Molecular Phylogenetics and Evolution, 61 (2), 470-483. doi: 10.1016/j.ympev.2011.06.015
Eldridge, M. D. B., Heckenberg, K., Neaves, L. E., Metcalfe, C. J., Hamilton, S., Johnson, P. M. and Close, R. L. (2011). Genetic differentiation and introgression amongst Thylogale (pademelons) taxa in eastern Australia. Australian Journal of Zoology, 59 (2), 103-117. doi: 10.1071/zo11022
Metcalfe, Cushla J, Bulazel, Kira V, Ferreri, Gianni C, Schroeder-Reiter, Elizabeth, Wanner, Gerhard, Rens, Willem, Obergfell, Craig, Eldridge, Mark D B and O'Neill, Rachel J (2007). Genomic Instability Within Centromeres of Interspecific Marsupial Hybrids. Genetics, 177 (4), 2507-2517. doi: 10.1534/genetics.107.082313
Bulazel, Kira, Metcalfe, Cushla, Ferreri, Gianni C, Yu, Jingwei, Eldridge, Mark D B and O'Neill, Rachel J (2006). Cytogenetic and Molecular Evaluation of Centromere-Associated DNA Sequences From a Marsupial (Macropodidae:Macropus rufogriseus) X Chromosome. Genetics, 172 (2), 1129-1137. doi: 10.1534/genetics.105.047654