Dr Matthew Kelly
Adjunct Associate Professor
Queensland Alliance for Agriculture and Food Innovation
Journal Articles
Farah, Michel Marques, Fortes, Marina Rufino Salinas, Kelly, Matthew, Porto-Neto, Laercio Ribeiro, Meira, Camila Tangari, Duitama Carreno, Luis Orlando, da Fonseca, Ricardo and Moore, Stephen Stewart (2018). Accuracy of genomic selection predictions for hip height in Brahman cattle using different relationship matrices. Pesquisa Agropecuaria Brasileira, 53 (6), 717-726. doi: 10.1590/S0100-204X2018000600008
Mota, Rodrigo Reis, Silva, Fabyano Fonseca e, Guimarães, Simone Eliza Facioni, Hayes, Ben, Fortes, Marina Rufino Salinas, Kelly, Matthew John, Guimarães, José Domingos, Penitente-Filho, Jurandy Mauro, Ventura, Henrique Torres and Moore, Stephen (2018). Benchmarking Bayesian genome enabled-prediction models for age at first calving in Nellore cows. Livestock Science, 211, 75-79. doi: 10.1016/j.livsci.2018.03.009
Mota, R. R., Guimarães, S. E. F., Fortes, M. R. S., Hayes, B., Silva, F. F., Verardo, L. L., Kelly, M. J., de Campos, C. F., Guimarães, J. D., Wenceslau, R. R., Penitente-Filho, J. M., Garcia, J. F. and Moore, S. (2017). Genome-wide association study and annotating candidate gene networks affecting age at first calving in Nellore cattle. Journal of Animal Breeding and Genetics, 134 (6), 484-492. doi: 10.1111/jbg.12299
Soares, A. C. C., Guimaraes, S. E. F., Kelly, M. J., Fortes, M. R. S., e Silva, F. F., Verardo, L. L., Mota, R. R. and Moore, S. (2017). Multiple-trait genomewide mapping and gene network analysis for scrotal circumference growth curves in Brahman cattle. Journal of Animal Science, 95 (8), 3331-3345. doi: 10.2527/jas.2017.1409
Verardo, Lucas L., Silva, Fabyano F., Lopes, Marcos S., Madsen, Ole, Bastiaansen, John W. M., Knol, Egbert F., Kelly, Mathew, Varona, Luis, Lopes, Paulo S. and Guimaraes, Simone E. F. (2016). Revealing new candidate genes for reproductive traits in pigs: combining Bayesian GWAS and functional pathways. Genetics Selection Evolution, 48 (9) 189, 9. doi: 10.1186/s12711-016-0189-x
Farah, M. M., Swan, A. A., Fortes, M. R. S., Fonseca, R., Moore, S. S. and Kelly, M. J. (2016). Accuracy of genomic selection for age at puberty in a multi-breed population of tropically adapted beef cattle. Animal Genetics, 47 (1), 3-11. doi: 10.1111/age.12362
McGrory, C. A., Pettitt, A. N., Titterington, D. M., Alston, C. L. and Kelly, M. (2016). Transdimensional sequential Monte Carlo using variational Bayes - SMCVB. Computational Statistics and Data Analysis, 93, 246-254. doi: 10.1016/j.csda.2015.03.006
Camporez Crispim, Aline, Kelly, Matthew John, Facioni Guimarães, Simone Eliza, Fonseca e Silva, Fabyano, Rufino Salinas Fortes, Marina, Rocha Wenceslau, Raphael and Moore, Stephen (2015). Multi-Trait GWAS and new candidate genes annotation for growth curve parameters in Brahman cattle. PLoS ONE, 10 (10) e0139906, e0139906.1-e0139906.19. doi: 10.1371/journal.pone.0139906
Ferreira de Camargo, Gregorio Miguel, Porto-Neto, Laercio R., Kelly, Matthew J., Bunch, Rowan J., McWilliam, Sean M., Tonhati, Humberto, Lehnert, Sigrid A., Fortes, Marina R. S. and Moore, Stephen S. (2015). Non-synonymous mutations mapped to chromosome X associated with andrological and growth traits in beef cattle. BMC Genomics, 16 (1) 384, 384.1-384.10. doi: 10.1186/s12864-015-1595-0
Azevedo, C. F., Silva, F. F., de Resende M. D. V., Lopes. M. S., Duijvesteijn, N., Guimaraes, S. E. F., Lopes, P. S., Kelly, M. J., Viana, J. M. S. and Knol, E. F. (2014). Supervised independent component analysis as an alternative method for genomic selection in pigs. Journal of Animal Breeding and Genetics, 131 (6), 452-461. doi: 10.1111/jbg.12104
Meira, Camila Tangari, Fortes, Marina R. S., Farah, Michel Marques, Porto-Neto, Laercio R., Kelly, Matthew, Moore, Stephen S., Pereira, Guilherme L., Chardulo, Luis Artur Loyola and Curi, Rogerio Abdallah (2014). Speed index in the racing quarter horse: a genome-wide association study. Journal of Equine Veterinary Science, 34 (11-12), 1263-1268. doi: 10.1016/j.jevs.2014.09.003
Ramayo-Caldas, Y., Fortes, M. R. S., Hudson, N. J., Porto-Neto, L. R., Bolormaa, S., Barendse, W., Kelly, M., Moore, S. S., Goddard, M. E., Lehnert, S. A. and Reverter, A. (2014). A marker-derived gene network reveals the regulatory role of PPARGC1A, HNF4G, and FOXP3 in intramuscular fat deposition of beef cattle. Journal of Animal Science, 92 (7), 2832-2845. doi: 10.2527/jas.2013-7484
Kelly, M. J., Tume, R. K., Fortes, M. and Thompson, J. M. (2014). Whole-genome association study of fatty acid composition in a diverse range of beef cattle breeds. Journal of Animal Science, 92 (5), 1895-1901. doi: 10.2527/jas2013-6901
Boddhireddy, P., Kelly, M. J., Northcutt, S., Prayaga, K. C., Rumph, J. and DeNise, S. (2014). Genomic predictions in Angus cattle: comparisons of sample size, response variables, and clustering methods for cross-validation. Journal of Animal Science, 92 (2), 485-497. doi: 10.2527/jas.2013-6757
Lyons, Russell E., Loan, Nguyen To, Dierens, Leanne, Fortes, Marina R. S., Kelly, Matthew, McWilliam, Sean S., Li, Yutao, Bunch, Rowan J., Harrison, Blair E., Barendse, William, Lehnert, Sigrid A. and Moore, Stephen S. (2014). Evidence for positive selection of taurine genes within a QTL region on chromosome X associated with testicular size in Australian Brahman cattle. BMC Genetics, 15 (1) 6, 6.1-6.10. doi: 10.1186/1471-2156-15-6
Strucken, E. M., Gudex, B., Ferdosi, M. H., Lee, H. K., Song, K. D., Gibson, J. P., Kelly, M., Piper, E. K., Porto-Neto, L. R., Lee, S. H. and Gondro, C. (2014). Performance of different SNP panels for parentage testing in two East Asian cattle breeds. Animal Genetics, 45 (4), 572-575. doi: 10.1111/age.12154
Lu, Duc, Sargolzaei, Mehdi, Kelly, Matthew, Vander Voort, Gordon, Wang, Zhiquan, Mandell, Ira, Moore, Stephen, Plastow, Graham and Miller, Stephen Paul (2013). Genome-wide association analyses for carcass quality in crossbred beef cattle. BMC Genetics, 14 (1) 80, 80.1-80.10. doi: 10.1186/1471-2156-14-80
Zwambag, Andrew, Kelly, Matthew, Schenkel, Flavio, Mandell, Ira, Wilton, James and Miller, Stephen (2013). Heritability of beef tenderness at different aging times and across breed comparisons. Canadian Journal of Animal Science, 93 (3), 307-312. doi: 10.4141/CJAS2012-100
Lu, D., Miller, S., Sargolzaei, M., Kelly, M., Voort, G. Vander, Caldwell, T., Wang, Z., Plastow, G. and Moore, S. (2013). Genome-wide association analyses for growth and feed efficiency traits in beef cattle. Journal of Animal Science, 91 (8), 3612-3633. doi: 10.2527/jas2012-5716
Fortes, M. R. S., Reverter, A., Kelly, M., McCulloch, R. and Lehnert, S. A. (2013). Genome-wide association study for inhibin, luteinizing hormone, insulin-like growth factor 1, testicular size and semen traits in bovine species. Andrology, 1 (4), 644-650. doi: 10.1111/j.2047-2927.2013.00101.x
Abo-Ismail, M. K., Kelly, M. J., Squires, E. J., Swanson, K. C., Bauck, S. and Miller, S. P. (2013). Identification of single nucleotide polymorphisms in genes involved in digestive and metabolic processes associated with feed efficiency and performance traits in beef cattle. Journal of Animal Science, 91 (6), 2512-2529. doi: 10.2527/jas2012-5756
Kelly, M. J., Tume, R. K., Newman, S. and Thompson, J. M. (2013). Genetic variation in fatty acid composition of subcutaneous fat in cattle. Animal Production Science, 53 (2), 129-133. doi: 10.1071/AN12154
Lu, Duc, Sargolzaei, Mehdi, Kelly, Matthew, Li, Changxi, Vander Voort, Gordon, Wang, Zhiquan, Plastow, Graham, Moore, Stephen and Miller, Stephen P. (2012). Linkage disequilibrium in Angus, Charolais, and Crossbred beef cattle. Frontiers in Genetics, 3 (AUG) Article 152, 152.1-152.10. doi: 10.3389/fgene.2012.00152
Smith, N. N., Kelly, M. J., Pell, J. M. and Hill, R. A. (2010). Administration of bovine anti-IGF-1 immunoglobulin to dietary protein deficient rats alters dietary intake and plasma IGF-1 binding profiles, but does not affect change in body mass. Animal, 4 (9), 1553-1560. doi: 10.1017/S1751731110000686
Case, L. A., Kelly, M. J., Miller, S. P. and Wood, B. J. (2010). Genotype x environment interaction as it relates to egg production in turkeys (Meleagris gallopavo). Journal of Animal Science, 88 (6), 1957-1966. doi: 10.2527/jas.2009-2004
Wood, K. M., Kelly, M. J., Miller, S. P., Mandell, I. B. and Swanson, K. C. (2010). Effect of crop residues in haylage-based rations on the performance of pregnant beef cows. Canadian Journal of Animal Science, 90 (1), 69-76. doi: 10.4141/CJAS09070
Tsoutsman, Tatiana, Kelly, Matthew, Ng, Dominic C. H., Tan, Ju-En, Tu, Emily, Lam, Lien, Bogoyevitch, Marie A., Seidman, Christine E., Seidman, J. G. and Semsarian, Christopher (2008). Severe heart failure and early mortality in a double-mutation mouse model of familial hypertrophic cardiomyopathy. Circulation, 117 (14), 1820-1831. doi: 10.1161/CIRCULATIONAHA.107.755777
Kelly, M. J., Swan, A. A. and Atkins, K. D. (2007). Optimal use of on-farm fibre diameter measurement and its impact on reproduction in commercial Merino flocks. Australian Journal of Experimental Agriculture, 47 (5), 525-534. doi: 10.1071/EA06222
Kelly, MJ, Tume, RK, Newman, SA and Thompson, JM (2001). Environmental effects on the fatty acid composition of subcutaneous beef fat. Australian Journal of Experimental Agriculture, 41 (7), 1023-1031. doi: 10.1071/EA00025
Frisch, JE, O'Neill, CJ and Kelly, MJ (2000). Using genetics to control cattle parasites - the Rockhampton experience. International Journal for Parasitology, 30 (3), 253-264. doi: 10.1016/S0020-7519(00)00010-2
Conference Papers
Crispim, Aline Camporez, Kelly, Matthew J., Silva, Fabyano F., Fortes, Marina R. S., Guimaraes, Simone E. F., Lopes, Paolo S. and Moore, Stephen S. (2014). Genome Wide Association for growth curve parameters in Brahman cattle. 10th World Congress of Genetics Applied to Livestock Production, Vancouver, 2014.
Swan, A. A, Brown, D. J., Daetwyler, H. D., Hayes, B. J., Kelly, M., Moghaddar, N. and van der Werf, J. H. J. (2014). Genomic evaluations in the Australian sheep industry. 10th World Congress of Genetics Applied to Livestock Production, Vancouver Canada, 2014.
Porto-Neto, L., Fortes, M. R. S., Kelly, M., Lehnert, S. A. and Reverter, A. (2014). A Gene Network Inferred from Genome-wide Association: Prioritization of QTLs Associated with Tropical Cattle Reproduction. 10th World Congress of Genetics Applied to Livestock Production, Vancouver, 2014.
Connolly, S., Fortes, M., Piper, E., Seddon, J. and Kelly, M. (2014). Determining the number of animals required to accurately determine breed composition using genomic data Proceedings. 10th World Congress of Genetics Applied to Livestock Production, Vancouver Canada, 2014.
Kelly, M. J. and Thompson, J. (2014). Estimating the economic value of using a panel of tenderness markers to select for improved consumer palatability scores. 10th World Congress of Genetics Applied to Livestock Production, Vancouver, 2014.
Guimarães, S. E. F., Verardo, L. L., Silva, F. F., Kelly, M., Lopes, M. S., Bastiaansen, J., Lopes, P. S. and Knol, E. (2014). Candidate genes network for number of teats in pigs. 10th World Congress of Genetics Applied to Livestock Production, Vancouver, 2014.
Kelly, M., Fortes, M. R. S. and Moore, S. S. (2013). Accuracy of imputation in a population of tropical composite cattle with particular emphasis on the use of allelic R2 as a quality control metric. AAABG 2013: 20th Conference of the Association for the Advancement of Animal Breeding and Genetics, Napier, New Zealand, 20-23 October, 2013. Armidale, NSW, Australia: Association for the Advancement of Animal Breeding and Genetics.
Abo-Ismail, M. K., Swanson, K. C., Kelly, M. J., Squires, E. J., Salim, H. and Miller, S. P. (2011). Single nucleotide polymorphisms (SNPs) in candidate genes are associated with digestive function in multi-breed beef cattle. Proceedings of the Canadian Society of Animal Science 60th Annual Meeting, Halifax, Nova Scotia, 4-5 May 2011. Ottawa, ON, Canada: Agricultural Institute of Canada.
Lu, D. T., Kelly, M. J., Sargolzaei, M. and Miller, S. P. (2009). Estimating breeding values using segments of chromosomes determined by lowest score criteria based on dense SNP data. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Aboismail, M., Kelly, M. J., Quinton, M., Wilton, J. W. and Miller, S. P. (2009). Improving feed efficiency in beef cattle: does it matter whether we select on dry matter intake or residual feed intake. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Wood, K. M., Kelly, M. J., Miller, S. P., Mandell, I. B. and Swanson, K. C. (2009). The effect of inclusion of crop residues as a winter feed source in haylage based rations on performance of pregnant beef cows. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Kelly, M. J., Lu, D. T. and Miller, S. P. (2009). Comparison of methods for preparing feed intake records for analysis of average daily intake from an automated feed intake monitoring system. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Lowerison, M. W., Kelly, M., Miller, S. P., Wilton, J. W. and Kemp, R. A. (2009). Correlated response to selection in five residual feed intake phenotypes. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Vander Voort, G. E., Kelly, M. J. and Miller, S. P. (2009). Effect of information source on estimates of SNP substitution effects. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Case, L., Kelly, M. J. and Miller, S. P. (2009). Development of an equation to determine residual feed intake in first parity beef cows. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Glover, P., Miller, S. P. and Kelly, M. J. (2009). Effect of high milk production in beef cattle on subsequent fertility. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Kelly, M. J., Sargolzaei, M., Schenkel, F. S., Wang, Z., Stothard, P., Moore, S. S. and Miller, S. P. (2009). Comparison of linkage disequilibrium decay between a multi-breed beef herd and purebred Angus, Piedmontese and Holstein cattle. 2008 Canadian Society of Animal Science Annual Meeting, Guelph, Canada, 11-14 August 2008. Ottawa, ON, Canada: Agricultural Institute of Canada.
Kelly, M.J., Hayes, B.J. and Miller, S.P. (2007). Design of a whole genome scan experiment for a multi-breed beef cattle population with a complex pedigree. 17th Conference: Genetic Improvement - Making it Happen, Armidale, N.S.W., 23-26 September 2007. Armidale NSW: Association for the Advancement of Animal Breeding Genetics.
Kelly, M. J., Miller, S. P. and Wilton, J. W. (2006). Days between first service and conception in a multi-breed beef seed-stock herd is heritable but different age classes should be considered as different genetic traits.. Canadain Society of Animal Science, Canadian Society of Agronomy and Canadian Society of Horticulture Science joint conference, Halifax, Nova Scotia, Canada, 4-5 May 2006. Ottawa, Canada: Agricultural Institute of Canada. doi: 10.4141/A06-CSASabstracts