Journal Articles
Fuentes, Roven Rommel, Chebotarov, Dmytro, Duitama, Jorge, Smith, Sean, De la Hoz, Juan Fernando, Mohiyuddin, Marghoob, Wing, Rod A., McNally, Kenneth L., Tatarinova, Tatiana, Grigoriev, Andrey, Mauleon, Ramil and Alexandrov, Nickolai (2019) Structural variants in 3000 rice genomes. Genome Research, 29 5: 870-880. doi:10.1101/gr.241240.118
Zhang, Li, Ren, Yan, Yang, Tao, Li, Guangwei, Chen, Jianhai, Gschwend, Andrea R., Yu, Yeisoo, Hou, Guixue, Zi, Jin, Zhou, Ruo, Wen, Bo, Zhang, Jianwei, Chougule, Kapeel, Wang, Muhua, Copetti, Dario, Peng, Zhiyu, Zhang, Chengjun, Zhang, Yong, Ouyang, Yidan, Wing, Rod A., Liu, Siqi and Long, Manyuan (2019) Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution, 3 4: 679-690. doi:10.1038/s41559-019-0822-5
Kim, Nam-Hoon, Jayakodi, Murukarthick, Lee, Sang-Choon, Choi, Beom-Soon, Jang, Woojong, Lee, Junki, Kim, Hyun Hee, Waminal, Nomar E., Lakshmanan, Meiyappan, van Nguyen, Binh, Lee, Yun Sun, Park, Hyun-Seung, Koo, Hyun Jo, Park, Jee Young, Perumal, Sampath, Joh, Ho Jun, Lee, Hana, Kim, Jinkyung, Kim, In Seo, Kim, Kyunghee, Koduru, Lokanand, Kang, Kyo Bin, Sung, Sang Hyun, Yu, Yeisoo, Park, Daniel S., Choi, Doil, Seo, Eunyoung, Kim, Seungill, Kim, Young-Chang, Hyun, Dong Yun, Park, Youn-Il, Kim, Changsoo, Lee, Tae-Ho, Kim, Hyun Uk, Soh, Moon Soo, Lee, Yi, In, Jun Gyo, Kim, Heui-Soo, Kim, Yong-Min, Yang, Deok-Chun, Wing, Rod A., Lee, Dong-Yup, Paterson, Andrew H. and Yang, Tae-Jin (2018) Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant Biotechnology Journal, 16 11: 1904-1917. doi:10.1111/pbi.12926
Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos, Wu, Cheng-chieh, Kao, Shu-min, Zeng, Jhih-wun, Wei, Fu-jin, Zhao, Qiang, Feng, Qi, El Baidouri, Moaine, Carpentier, Marie-Christine, Lasserre, Eric, Cooke, Richard, da Rosa Farias, Daniel, da Maia, Luciano Carlos, dos Santos, Railson S., Nyberg, Kevin G., McNally, Kenneth L., Mauleon, Ramil, Alexandrov, Nickolai, Schmutz, Jeremy, Flowers, Dave, Fan, Chuanzhu, Weigel, Detlef, Jena, Kshirod K., Wicker, Thomas, Chen, Mingsheng, Han, Bin, Henry, Robert, Hsing, Yue-ie C., Kurata, Nori, de Oliveira, Antonio Costa, Panaud, Olivier, Jackson, Scott A., Machado, Carlos A., Sanderson, Michael J., Long, Manyuan, Ware, Doreen and Wing, Rod A. (2018) Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 11: 1618-1618. doi:10.1038/s41588-018-0261-2
Wing, Rod A., Purugganan, Michael D. and Zhang, Qifa (2018) The rice genome revolution: from an ancient grain to Green Super Rice. Nature Reviews Genetics, 19 8: 505-517. doi:10.1038/s41576-018-0024-z
Liao, Yi, Zhang, Xuemei, Li, Bo, Liu, Tieyan, Chen, Jinfeng, Bai, Zetao, Wang, Meijiao, Shi, Jinfeng, Walling, Jason G., Wing, Rod A., Jiang, Jiming and Chen, Mingsheng (2018) Comparison of Oryza sativa and Oryza brachyantha genomes reveals selection-driven gene escape from the centromeric Regions. The Plant Cell, 30 8: 1729-1744. doi:10.1105/tpc.18.00163
Lv, Shuwei, Wu, Wenguang, Wang, Muhua, Meyer, Rachel S., Ndjiondjop, Marie-Noelle, Tan, Lubin, Zhou, Haiying, Zhang, Jianwei, Fu, Yongcai, Cai, Hongwei, Sun, Chuanqing, Wing, Rod A. and Zhu, Zuofeng (2018) Genetic control of seed shattering during African rice domestication. Nature Plants, 4 6: 331-337. doi:10.1038/s41477-018-0164-3
Wang, Wensheng, Mauleon, Ramil, Hu, Zhiqiang, Chebotarov, Dmytro, Tai, Shuaishuai, Wu, Zhichao, Li, Min, Zheng, Tianqing, Fuentes, Roven Rommel, Zhang, Fan, Mansueto, Locedie, Copetti, Dario, Sanciangco, Millicent, Palis, Kevin Christian, Xu, Jianlong, Sun, Chen, Fu, Binying, Zhang, Hongliang, Gao, Yongming, Zhao, Xiuqin, Shen, Fei, Cui, Xiao, Yu, Hong, Li, Zichao, Chen, Miaolin, Detras, Jeffrey, Zhou, Yongli, Zhang, Xinyuan, Zhao, Yue, Kudrna, Dave, Wang, Chunchao, Li, Rui, Jia, Ben, Lu, Jinyuan, He, Xianchang, Dong, Zhaotong, Xu, Jiabao, Li, Yanhong, Wang, Miao, Shi, Jianxin, Li, Jing, Zhang, Dabing, Lee, Seunghee, Hu, Wushu, Poliakov, Alexander, Dubchak, Inna, Ulat, Victor Jun, Borja, Frances Nikki, Mendoza, John Robert, Ali, Jauhar, Gao, Qiang, Niu, Yongchao, Yue, Zhen, Naredo, Ma. Elizabeth B., Talag, Jayson, Wang, Xueqiang, Li, Jinjie, Fang, Xiaodong, Yin, Ye, Glaszmann, Jean-Christophe, Zhang, Jianwei, Li, Jiayang, Hamilton, Ruaraidh Sackville, Wing, Rod A., Ruan, Jue, Zhang, Gengyun, Wei, Chaochun, Alexandrov, Nickolai, McNally, Kenneth L., Li, Zhikang and Leung, Hei (2018) Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature, 557 7703: 43-49. doi:10.1038/s41586-018-0063-9
Bhatia, Dharminder, Wing, Rod A., Yu, Yeisoo, Chougule, Kapeel, Kudrna, Dave, Lee, Seunghee, Rang, Allah and Singh, Kuldeep (2018) Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length. Euphytica, 214 2: . doi:10.1007/s10681-018-2119-1
Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos, Wu, Cheng-chieh, Kao, Shu-min, Zeng, Jhih-wun, Wei, Fu-jin, Zhao, Qiang, Feng, Qi, El Baidouri, Moaine, Carpentier, Marie-Christine, Lasserre, Eric, Cooke, Richard, Rosa Farias, Daniel Da, da Maia, Luciano Carlos, Dos Santos, Railson S., Nyberg, Kevin G., McNally, Kenneth L., Mauleon, Ramil, Alexandrov, Nickolai, Schmutz, Jeremy, Flowers, Dave, Fan, Chuanzhu, Weigel, Detlef, Jena, Kshirod K., Wicker, Thomas, Chen, Mingsheng, Han, Bin, Henry, Robert, Hsing, Yue-ie C., Kurata, Nori, de Oliveira, Antonio Costa, Panaud, Olivier, Jackson, Scott A., Machado, Carlos A., Sanderson, Michael J., Long, Manyuan, Ware, Doreen and Wing, Rod A. (2018) Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 2: 285-296. doi:10.1038/s41588-018-0040-0
dos Santos, Railson Schreinert, Farias, Daniel da Rosa, Pegoraro, Camila, Rombaldi, Cesar Valmor, Fukao, Takeshi, Wing, Rod A. and de Oliveira, Antonio Costa (2017) Evolutionary analysis of the SUB1 locus across the Oryza genomes. Rice, 10 1: . doi:10.1186/s12284-016-0140-3
Copetti, Dario, Búrquez, Alberto, Bustamante, Enriquena, Charboneau, Joseph L. M., Childs, Kevin L., Eguiarte, Luis E., Lee, Seunghee, Liu, Tiffany L., McMahon, Michelle M., Whiteman, Noah K., Wing, Rod A., Wojciechowski, Martin F. and Sanderson, Michael J. (2017) Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. Proceedings of the National Academy of Sciences of the United States of America, 114 45: 12003-12008. doi:10.1073/pnas.1706367114
Harkess, Alex, Zhou, Jinsong, Xu, Chunyan, Bowers, John E, Van der Hulst, Ron, Ayyampalayam, Saravanaraj, Mercati, Francesco, Riccardi, Paolo, McKain, Michael R, Kakrana, Atul, Tang, Haibao, Ray, Jeremy, Groenendijk, John, Arikit, Siwaret, Mathioni, Sandra M, Nakano, Mayumi, Shan, Hongyan, Telgmann-Rauber, Alexa, Kanno, Akira, Yue, Zhen, Chen, Haixin, Li, Wenqi, Chen, Yanling, Xu, Xiangyang, Zhang, Yueping, Luo, Shaochun, Chen, Helong, Gao, Jianming, Mao, Zichao, Pires, J Chris, Luo, Meizhong, Kudrna, Dave, Wing, Rod A, Meyers, Blake C, Yi, Kexian, Kong, Hongzhi, Lavrijsen, Pierre, Sunseri, Francesco, Falavigna, Agostino, Ye, Yin, Leebens-Mack, James H and Chen, Guangyu (2017) The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications, 8 1: 1279. doi:10.1038/s41467-017-01064-8
Eizenga, G. C., Sanchez, P. L., Jackson, A. K., Edwards, J. D., Hurwitz, B. L., Wing, R. A. and Kudrna, D. (2017) Genetic variation for domestication-related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) × ancestral rice, O. nivara, mapping population. Molecular Breeding, 37 11: . doi:10.1007/s11032-017-0734-5
Brozynska, Marta, Copetti, Dario, Furtado, Agnelo, Wing, Rod A., Crayn, Darren, Fox, Glen, Ishikawa, Ryuji and Henry, Robert J. (2017) Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. Plant Biotechnology Journal, 15 6: 765-774. doi:10.1111/pbi.12674
Wu, Wenguang, Liu, Xiaoyun, Wang, Muhua, Meyer, Rachel S., Luo, Xiaojin, Ndjiondjop, Marie-Noelle, Tan, Lubin, Zhang, Jianwei, Wu, Jianzhong, Cai, Hongwei, Sun, Chuanqing, Wang, Xiangkun, Wing, Rod A. and Zhu, Zuofeng (2017) A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. Nature Plants, 3 . doi:10.1038/nplants.2017.64
Lee, Cheng-Ruei, Wang, Baosheng, Mojica, Julius P., Mandáková, Terezie, Prasad, Kasavajhala V. S. K., Goicoechea, Jose Luis, Perera, Nadeesha, Hellsten, Uffe, Hundley, Hope N., Johnson, Jenifer, Grimwood, Jane, Barry, Kerrie, Fairclough, Tephen, Jenkins, Jerry W., Yu, Yeisoo, Kudrna, Dave, Zhang, Jianwei, Talag, Jayson, Golser, Wolfgang, Ghattas, Kathryn, Schranz, M. Eric, Wing, Rod, Lysak, Martin A., Schmutz, Jeremy, Rokhsar, Daniel S. and Mitchell-Olds, Thomas (2017) Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology and Evolution, 1 5: . doi:10.1038/s41559-017-0119
Choi, Jae Young, Platts, Adrian E., Fuller, Dorian Q., Hsing, Yue-Ie, Wing, Rod A., Purugganan, Michael D. and Kim, Yuseob (2017) The rice paradox: multiple origins but single domestication in Asian Rice. Molecular Biology and Evolution, 34 4: 969-979. doi:10.1093/molbev/msx049
Thakare, Dhiraj, Zhang, Jianwei, Wing, Rod A., Cotty, Peter J. and Schmidt, Monica A. (2017) Aflatoxin-free transgenic maize using host-induced gene silencing. Science Advances, 3 3: e1602382. doi:10.1126/sciadv.1602382
Mansueto, Locedie, Fuentes, Roven Rommel, Borja, Frances Nikki, Detras, Jeffery, Abrio-Santos, Juan Miguel, Chebotarov, Dmytro, Sanciangco, Millicent, Palis, Kevin, Copetti, Dario, Poliakov, Alexandre, Dubchak, Inna, Solovyev, Victor, Wing, Rod A., Hamilton, Ruaraidh Sackville, Mauleon, Ramil, McNally, Kenneth L. and Alexandrov, Nickolai (2017) Rice SNP-seek database update: New SNPs, indels, and queries. Nucleic Acids Research, 45 D1: D1075-D1081. doi:10.1093/nar/gkw1135
Copetti, Dario and Wing, Rod A. (2016) The dark side of the genome: revealing the native transposable element/repeat content of Eukaryotic genomes. Molecular Plant, 9 12: 1664-1666. doi:10.1016/j.molp.2016.09.006
Gan, Xiangchao, Hay, Angela, Kwantes, Michiel, Haberer, Georg, Hallab, Asis, Ioio, Raffaele Dello, Hofhuis, Hugo, Pieper, Bjorn, Cartolano, Maria, Neumann, Ulla, Nikolov, Lachezar A., Song, Baoxing, Hajheidari, Mohsen, Briskine, Roman, Kougioumoutzi, Evangelia, Vlad, Daniela, Broholm, Suvi, Hein, Jotun, Meksem, Khalid, Lightfoot, David, Shimizu, Kentaro K., Shimizu-Inatsugi, Rie, Imprialou, Martha, Kudrna, David, Wing, Rod, Sato, Shusei, Huijser, Peter, Filatov, Dmitry, Mayer, Klaus F. X., Mott, Richard and Tsiantis, Miltos (2016) The Cardamine hirsuta genome offers insight into the evolution of morphological diversity. Nature Plants, 2 . doi:10.1038/nplants.2016.167
Zhang, Jianwei, Kudrna, Dave, Mu, Ting, Li, Weiming, Copetti, Dario, Yu, Yeisoo, Goicoechea, Jose Luis, Lei, Yang and Wing, Rod A. (2016) Genome puzzle master (GPM): An integrated pipeline for building and editing pseudomolecules from fragmented sequences. Bioinformatics, 32 20: 3058-3064. doi:10.1093/bioinformatics/btw370
Van Andel, Tinde R., Meyer, Rachel S., Aflitos, Saulo A., Carney, Judith A., Veltman, Margaretha A., Copetti, Dario, Flowers, Jonathan M., Havinga, Reinout M., Maat, Harro, Purugganan, Michael D., Wing, Rod A. and Schranz, M. Eric (2016) Tracing ancestor rice of Suriname Maroons back to its African origin. Nature Plants, 2 10: . doi:10.1038/nplants.2016.149
Zhang, Jianwei, Chen, Ling-Ling, Sun, Shuai, Kudrna, Dave, Copetti, Dario, Li, Weiming, Mu, Ting, Jiao, Wen-Biao, Xing, Feng, Lee, Seunghee, Talag, Jayson, Song, Jia-Ming, Du, Bogu, Xie, Weibo, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A. and Zhang, Qifa (2016) Building two indica rice reference genomes with PacBio long-read and Illumina paired-end sequencing data. Scientific Data, 3 . doi:10.1038/sdata.2016.76
Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A. and Roffler, Stefan (2016) DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications, 7 . doi:10.1038/ncomms12790
Zhang, Jianwei, Chen, Ling-Ling, Xing, Feng, Kudrna, David A., Yao, Wen, Copetti, Dario, Mu, Ting, Li, Weiming, Song, Jia-Ming, Xie, Weibo, Lee, Seunghee, Talag, Jayson, Shao, Lin, An, Yue, Zhang, Chun-Liu, Ouyang, Yidan, Sun, Shuai, Jiao, Wen-Biao, Lv, Fang, Du, Bogu, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Zhou, Zhi-Wei, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A. and Zhang, Qifa (2016) Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences, 113 35: E5163-E5171. doi:10.1073/pnas.1611012113
Ray, Soham, Bose, Lotan K., Ray, Joshitha, Ngangkham, Umakanta, Katara, Jawahar L., Samantaray, Sanghamitra, Behera, Lambodar, Anumalla, Mahender, Singh, Onkar N., Chen, Meingsheng, Wing, Rod A. and Mohapatra, Trilochan (2016) Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha. Molecular Genetics and Genomics, 291 4: 1783-1794. doi:10.1007/s00438-016-1214-z
Wang, Jun, Yu, Yeisoo, Tao, Feng, Zhang, Jianwei, Copetti, Dario, Kudrna, Dave, Talag, Jayson, Lee, Seunghee, Wing, Rod A. and Fan, Chuanzhu (2016) DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology, 17 1: . doi:10.1186/s13059-016-0954-8
Wendel, Jonathan F., Jackson, Scott A., Meyers, Blake C. and Wing, Rod A. (2016) Evolution of plant genome architecture. Genome Biology, 17 37: . doi:10.1186/s13059-016-0908-1
De Vega, Jose J., Ayling, Sarah, Hegarty, Matthew, Kudrna, Dave, Goicoechea, Jose L., Ergon, Åshild, Rognli, Odd A., Jones, Charlotte, Swain, Martin, Geurts, Rene, Lang, Chunting, Mayer, Klaus F. X., Rössner, Stephan, Yates, Steven, Webb, Kathleen J., Donnison, Iain S., Oldroyd, Giles E. D., Wing, Rod A., Caccamo, Mario, Powell, Wayne, Abberton, Michael T. and Skøt, Leif (2015) Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. Scientific Reports, 5 . doi:10.1038/srep17394
Zhang, Yesheng, Zhang, Shilai, Liu, Hui, Fu, Binying, Li, Lijuan, Xie, Min, Song, Yue, Li, Xin, Cai, Jing, Wan, Wenting, Kui, Ling, Huang, Hui, Lyu, Jun, Dong, Yang, Wang, Wensheng, Huang, Liyu, Zhang, Jing, Yang, Qinzhong, Shan, Qinli, Li, Qiong, Huang, Wangqi, Tao, Dayun, Wang, Muhua, Chen, Mingsheng, Yu, Yeisoo, Wing, Rod A., Wang, Wen and Hu, Fengyi (2015) Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility. Molecular Plant, 8 11: 1683-1686. doi:10.1016/j.molp.2015.08.006
Kim, Kyunghee, Lee, Sang-Choon, Lee, Junki, Yu, Yeisoo, Yang, Kiwoung, Choi, Beom-Soon, Koh, Hee-Jong, Waminal, Nomar Espinosa, Choi, Hong-Il, Kim, Nam-Hoon, Jang, Woojong, Park, Hyun-Seung, Lee, Jonghoon, Lee, Hyun Oh, Joh, Ho Jun, Lee, Hyeon Ju, Park, Jee Young, Perumal, Sampath, Jayakodi, Murukarthick, Lee, Yun Sun, Kim, Backki, Copetti, Dario, Kim, Soonok, Kim, Sunggil, Lim, Ki-Byung, Kim, Young-Dong, Lee, Jungho, Cho, Kwang-Su, Park, Beom-Seok, Wing, Rod A. and Yang, Tae-Jin (2015) Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Scientific Reports, 5 . doi:10.1038/srep15655
Wing, Rod A. (2015) Harvesting rice's dispensable genome. Genome Biology, 16 1: . doi:10.1186/s13059-015-0787-x
Copetti, Dario, Zhang, Jianwei, El Baidouri, Moaine, Gao, Dongying, Wang, Jun, Barghini, Elena, Cossu, Rosa M., Angelova, Angelina, Maldonado L., Carlos E., Roffler, Stefan, Ohyanagi, Hajime, Wicker, Thomas, Fan, Chuanzhu, Zuccolo, Andrea, Chen, Mingsheng, Costa de Oliveira, Antonio, Han, Bin, Henry, Robert, Hsing, Yue-ie, Kurata, Nor, Wang, Wen, Jackson, Scott A., Panaud, Olivier and Wing, Rod A. (2015) RiTE database: A resource database for genus-wide rice genomics and evolutionary biology. BMC Genomics, 16 1: 538-538. doi:10.1186/s12864-015-1762-3
Sanderson, Michael J., Copetti, Dario, Búrquez, Alberto, Bustamante, Enriquena, Charboneau, Joseph L. M., Eguiarte, Luis E., Kumar, Sudhir, Lee, Hyun Oh, Lee, Junki, McMahon, Michelle, Steele, Kelly, Wing, Rod, Yang, Tae-Jin, Zwickl, Derrick and Wojciechowski, Martin F. (2015) Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): loss of the ndh gene suite and inverted repeat 1. American Journal of Botany, 102 7: 1115-1127. doi:10.3732/ajb.1500184
Gao, Dongying, Jiang, Ning, Wing, Rod A., Jiang, Jiming and Jackson, Scott A. (2015) Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science, 6 APR: . doi:10.3389/fpls.2015.00216
Muñoz-Amatriaín, María, Lonardi, Stefano, Luo, Mingcheng, Madishetty, Kavitha, Svensson, Jan T., Moscou, Matthew J., Wanamaker, Steve, Jiang, Tao, Kleinhofs, Andris, Muehlbauer, Gary J., Wise, Roger P., Stein, Nils, Ma, Yaqin, Rodriguez, Edmundo, Kudrna, Dave, Bhat, Prasanna R., Chao, Shiaoman, Condamine, Pascal, Heinen, Shane, Resnik, Josh, Wing, Rod, Witt, Heather N., Alpert, Matthew, Beccuti, Marco, Bozdag, Serdar, Cordero, Francesca, Mirebrahim, Hamid, Ounit, Rachid, Wu, Yonghui, You, Frank, Zheng, Jie, Simková, Hana, Dolezel, Jaroslav, Grimwood, Jane, Schmutz, Jeremy, Duma, Denisa, Altschmied, Lothar, Blake, Tom, Bregitzer, Phil, Cooper, Laurel, Dilbirligi, Muharrem, Falk, Anders, Feiz, Leila, Graner, Andreas, Gustafson, Perry, Hayes, Patrick M., Lemaux, Peggy, Mammadov, Jafar and Close, Timothy J. (2015) Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant Journal, 84 1: 216-227. doi:10.1111/tpj.12959
Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi and Teycheney, Pierre-Yves (2014) Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications, 5 1: 5269.1-5269.11. doi:10.1038/ncomms6269
Wang, Muhua, Yu, Yeisoo, Haberer, Georg, Marri, Pradeep Reddy, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Song, Xiang, Kudrna, Dave, Ammiraju, Jetty S.S., Cossu, Rosa Maria, Maldonado, Carlos, Chen, Jinfeng, Lee, Seunghee, Sisneros, Nick, De Baynast, Kristi, Golser, Wolfgang, Wissotski, Marina, Kim, Woojin, Sanchez, Paul, Ndjiondjop, Marie-Noelle, Sanni, Kayode, Long, Manyuan, Carney, Judith, Panaud, Olivier, Wicker, Thomas, MacHado, Carlos A., Chen, Mingsheng, Mayer, Klaus F.X., Rounsley, Steve and Wing, Rod A. (2014) The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics, 46 9: 982-988. doi:10.1038/ng.3044
Schmutz, Jeremy, McClean, Phillip E., Mamidi, Sujan, Wu, G Albert, Cannon, Steven B., Grimwood, Jane, Jenkins, Jerry, Shu, Shengqiang, Song, Qijian, Chavarro, Carolina, Torres-Torres, Mirayda, Geffroy, Valerie, Moghaddam, Samira Mafi, Gao, Dongying, Abernathy, Brian, Barry, Kerrie, Blair, Matthew, Brick, Mark A., Chovatia, Mansi, Gepts, Paul, Goodstein, David M., Gonzales, Michael, Hellsten, Uffe, Hyten, David L., Jia, Gaofeng, Kelly, James D., Kudrna, Dave, Lee, Rian, Richard, Manon M. S., Miklas, Phillip N., Osorno, Juan M., Rodrigues, Josiane, Thareau, Vincent, Urrea, Carlos A., Wang, Mei, Yu, Yeisoo, Zhang, Ming, Wing, Rod A., Cregan, Perry B., Rokhsar, Daniel S. and Jackson, Scott A. (2014) A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics, 46 7: 707-713. doi:10.1038/ng.3008
Wang, Xiaoming, Kudrna, David A., Pan, Yonglong, Wang, Hao, Liu, Lin, Lin, Haiyan, Zhang, Jianwei, Song, Xiang, Goicoechea, Jose Luis, Wing, Rod A., Zhang, Qifa and Luo, Meizhong (2014) Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping. Genetics, 196 4: 937-949. doi:10.1534/genetics.113.159970
Jacquemin, Julie, Ammiraju, Jetty S.S., Haberer, Georg, Billheimer, Dean D., Yu, Yeisoo, Liu, Liana C., Rivera, Luis F., Mayer, Klaus, Chen, Mingsheng and Wing, Rod A. (2014) Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion. Molecular Plant, 7 4: 642-656. doi:10.1093/mp/sst149
Pan, Yonglong, Deng, Ying, Lin, Haiyan, Kudrna, David A., Wing, Rod A., Li, Lijia, Zhang, Qifa and Luo, Meizhong (2014) Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. Plant Journal, 77 5: 795-805. doi:10.1111/tpj.12412
Ortiz, Marianyoly, Legatzki, Antje, Neilson, Julia W., Fryslie, Brandon, Nelson, William M., Wing, Rod A., Soderlund, Carol A., Pryor, Barry M. and Maier, Raina M. (2014) Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave. ISME Journal, 8 2: 478-491. doi:10.1038/ismej.2013.159
Chamala, Srikar, Chanderbali, Andre S., Der, Joshua P., Lan, Tianying, Walts, Brandon, Albert, Victor A., DePamphilis, Claude W., Leebens-Mack, Jim, Rounsley, Steve, Schuster, Stephan C., Wing, Rod A., Xiao, Nianqing, Moore, Richard, Soltis, Pamela S., Soltis, Douglas E. and Barbazuk, W. Brad (2013) Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science, 342 6165: 1516-1517. doi:10.1126/science.1241130
DePamphilis, Claude W., Palmer, Jeffrey D., Rounsley, Steve, Sankoff, David, Schuster, Stephan C., Ammiraju, Jetty S. S., Barbazuk, W. Bradley, Chamala, Srikar, Chanderbali, Andre S., Determann, Ronald, Hong, Ma., Ralph, Paula, Talag, Jason, Tomsho, Lynn, Walts, Brandon, Wanke, Stefan, Wing, Rod A., Chang, Tien-Hao, Lan, Tianying, Soltis, Douglas E., Arikit, Siwaret, Axtell, Michael J., Ayyampalayam, Saravanaraj, Burnette III, James M., De Paoli, Emanuele, Farrell, Nina P., Harkess, Alex, Jiao, Yuannian, Leebens-Mack, James, Liu, Kun, Mei, Wenbin, Meyers, Blake C., Shahid, Saima, Wafula, Eric, Wessler, Susan R., Zhai, Jixian, Zhang, Xiaoyu, Albert, Victor A., Carretero-Paulet, Lorenzo, Lyons, Eric, Tang, Haibao, Zheng, Chunfang, Altman, Naomi S., Chen, Feng, Chen, Jian-Qun, Chiang, Vincent, Der, Joshua P., Fogliani, Bruno, Guo, Chunce, Harholt, Jesper, Job, Claudette, Job, Dominique, Kim, Sangtae, Kong, Hongzhi, Li, Guanglin, Li, N., Liu, Jie, Park, Jongsun, Qi, Xinshuai, Rajjou, Loïc, Burtet-Sarramegna, Valérie, Sederoff, Ron, Sun, Ying-Hsuan, Ulvskov, Peter, Villegente, Matthieu, Xue, Jia-Yu, Yeh, Ting-Feng, Yu, Xianxian, Acosta, Juan J., Bruenn, Riva A., De Kochko, Alexandre, Herrera-Estrella, Luis R., Ibarra-Laclette, Enrique, Kirst, Matias, Pissis, Solon P., Poncet, Valérie and Soltis, Pamela S. (2013) The Amborella genome and the evolution of flowering plants. Science, 342 6165: . doi:10.1126/science.1241089
Wang, Chao, Shi, Xue, Liu, Lin, Li, Haiyan, Ammiraju, Jetty S.S., Kudrna, David A., Xiong, Wentao, Wang, Hao, Dai, Zhaozhao, Zheng, Yonglian, Lai, Jinsheng, Jin, Weiwei, Messing, Joachim, Bennetzen, Jeffrey L., Wing, Rod A. and Luo, Meizhong (2013) Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics, 195 3: 723-737. doi:10.1534/genetics.113.157115
Dereeper, Alexis, Guyot, Romain, Tranchant-Dubreuil, Christine, Anthony, François, Argout, Xavier, de Bellis, Fabien, Combes, Marie-Christine, Gavory, Frederick, de Kochko, Alexandre, Kudrna, Dave, Leroy, Thierry, Poulain, Julie, Rondeau, Myriam, Song, Xiang, Wing, Rod and Lashermes, Philippe (2013) BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology, 83 3: 177-189. doi:10.1007/s11103-013-0077-5
Singh, Rajinder, Ong-Abdullah, Meilina, Low, Eng-Ti Leslie, Manaf, Mohamad Arif Abdul, Rosli, Rozana, Nookiah, Rajanaidu, Ooi, Leslie Cheng-Li, Ooi, Siew-Eng, Chan, Kuang-Lim, Halim, Mohd Amin, Azizi, Norazah, Nagappan, Jayanthi, Bacher, Blaire, Lakey, Nathan, Smith, Steven W., He, Dong, Hogan, Michael, Budiman, Muhammad A., Lee, Ernest K., Desalle, Rob, Kudrna, David, Goicoechea, Jose Luis, Wing, Rod A., Wilson, Richard K., Fulton, Robert S., Ordway, Jared M., Martienssen, Robert A. and Sambanthamurthi, Ravigadevi (2013) Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature, 500 7462: 335-339. doi:10.1038/nature12309
Matsuba, Yuki, Nguyen, Thuong T.H., Wiegert, Krystle, Falara, Vasiliki, Gonzales-Vigil, Eliana, Leong, Bryan, Schäfer, Petra, Kudrna, David, Wing, Rod A., Bolger, Anthony M., Usadel, Björn, Tissier, Alain, Fernie, Alisdair R., Barry, Cornelius S. and Pichersky, Eran (2013) Evolution of a complex locus for terpene biosynthesis in Solanum. Plant Cell, 25 6: 2022-2036. doi:10.1105/tpc.113.111013
Horvath, David P., Kudrna, David, Talag, Jayson, Anderson, James V., Chao, Wun S., Wing, Rod, Foley, Michael E. and Doǧramaci, Münevver (2013) BAC library development and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula) identifies differential splicing and conserved promoter motifs. Weed Science, 61 2: 303-309. doi:10.1614/WS-D-12-00175.1
Zhang, Chengjun, Wang, Jun, Marowsky, Nicholas C., Long, Manyuan, Wing, Rod A. and Fan, Chuanzhu (2013) High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution, 5 5: 1038-1048. doi:10.1093/gbe/evt071
Jacquemin, Julie, Bhatia, Dharminder, Singh, Kuldeep and Wing, Rod A. (2013) The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology, 16 2: 147-156. doi:10.1016/j.pbi.2013.02.014
Yang, Ruolin, Jarvis, David E., Chen, Hao, Beilstein, Mark A., Grimwood, Jane, Jenkins, Jerry, Shu, ShengQiang, Prochnik, Simon, Xin, Mingming, Ma, Chuang, Schmutz, Jeremy, Wing, Rod A., Mitchell-Olds, Thomas, Schumaker, Karen S. and Wang, Xiangfeng (2013) The reference genome of the halophytic plant Eutrema salsugineum. Frontiers in Plant Science, 4 MAR: . doi:10.3389/fpls.2013.00046
Chen, Jinfeng, Huang, Quanfei, Gao, Dongying, Wang, Junyi, Lang, Yongshan, Liu, Tieyan, Li, Bo, Bai, Zetao, Luis Goicoechea, Jose, Liang, Chengzhi, Chen, Chengbin, Zhang, Wenli, Sun, Shouhong, Liao, Yi, Zhang, Xuemei, Yang, Lu, Song, Chengli, Wang, Meijiao, Shi, Jinfeng, Liu, Geng, Liu, Junjie, Zhou, Heling, Zhou, Weili, Yu, Qiulin, An, Na, Chen, Yan, Cai, Qingle, Wang, Bo, Liu, Binghang, Min, Jiumeng, Huang, Ying, Wu, Honglong, Li, Zhenyu, Zhang, Yong, Yin, Ye, Song, Wenqin, Jiang, Jiming, Jackson, Scott A., Wing, Rod A., Waang, Jun and Chen, Mingsheng (2013) Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications, 4 1: . doi:10.1038/ncomms2596
Koo, Hyun Jo, McDowell, Eric T., Ma, Xiaoqiang, Greer, Kevin A., Kapteyn, Jeremy, Xie, Zhengzhi, Descour, Anne, Kim, HyeRan, Yu, Yeisoo, Kudrna, David, Wing, Rod A., Soderlund, Carol A. and Gang, David R. (2013) Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. BMC Plant Biology, 13 1: . doi:10.1186/1471-2229-13-27
Ortiz, Marianyoly, Neilson, Julia W., Nelson, William M., Legatzki, Antje, Byrne, Andrea, Yu, Yeisoo, Wing, Rod A., Soderlund, Carol A., Pryor, Barry M., Pierson III, Leland S. and Maier, Raina M. (2013) Profiling Bacterial Diversity and Taxonomic Composition on Speleothem Surfaces in Kartchner Caverns, AZ. Microbial Ecology, 65 2: 371-383. doi:10.1007/s00248-012-0143-6
Mayer, Klaus F. X., Waugh, Robbie, Langridge, Peter, Close, Timothy J., Wise, Roger P., Graner, Andreas, Matsumoto, Takashi, Sato, Kazuhiro, Schulman, Alan, Ariyadasa, Ruvini, Schulte, Daniela, Poursarebani, Naser, Zhou, Ruonan, Steuernagel, Burkhard, Mascher, Martin, Scholz, Uwe, Shi, Bujun, Madishetty, Kavitha, Svensson, Jan T., Bhat, Prasanna, Moscou, Matthew, Resnik, Josh, Muehlbauer, Gary J., Hedley, Pete, Liu, Hui, Morris, Jenny, Frenkel, Zeev, Korol, Avraham, Bergès, Hélène, Taudien, Stefan, Felder, Marius, Groth, Marco, Platzer, Matthias, Himmelbach, Axel, Lonardi, Stefano, Duma, Denisa, Alpert, Matthew, Cordero, Francesa, Beccuti, Marco, Ciardo, Gianfranco, Ma, Yaqin, Wanamaker, Steve, Cattonaro, Federica, Vendramin, Vera, Scalabrin, Simone, Radovic, Slobodanka, Wing, Rod, Morgante, Michele, Nussbaumer, Thomas, Gundlach, Heidrun, Martis, Mihaela, Poland, Jesse, Pfeifer, Matthias, Moisy, Cédric, Tanskanen, Jaakko, Zuccolo, Andrea, Spannagl, Manuel, Russell, Joanne, Druka, Arnis, Marshall, David, Bayer, Micha, Swarbreck, David, Sampath, Dharanya, Ayling, Sarah, Febrer, Melanie, Caccamo, Mario, Tanaka, Tsuyoshi, Wannamaker, Steve, Schmutzer, Thomas, Brown, John W. S., Fincher, Geoffrey B. and Stein, Nils (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature, 491 7426: 711-716. doi:10.1038/nature11543
Sato, Shusei, Tabata, Satoshi, Hirakawa, Hideki, Asamizu, Erika, Shirasawa, Kenta, Isobe, Sachiko, Kaneko, Takakazu, Nakamura, Yasukazu, Shibata, Daisuke, Aoki, Koh, Egholm, Michael, Knight, James, Bogden, Robert, Li, Changbao, Shuang, Yang, Xu, Xun, Pan, Shengkai, Cheng, Shifeng, Liu, Xin, Ren, Yuanyuan, Wang, Jun, Albiero, Alessandro, Dal Pero, Francesca, Todesco, Sara, Van Eck, Joyce, Buels, Robert M., Bombarely, Aureliano, Gosselin, Joseph R., Huang, Minyun, Leto, Jonathan A., Menda, Naama, Strickler, Susan, Mao, Linyong, Gao, Shan, Tecle, Isaak Y., York, Thomas, Zheng, Yi, Vrebalov, Julia T., Lee, Jemin, Zhong, Silin, Mueller, Lukas A., Stiekema, Willem J., Ribeca, Paolo, Alioto, Tyler, Yang, Wencai, Huang, Sanwen, Du, Yongchen, Zhang, Zhonghua, Gao, Jianchang, Guo, Yanmei, Wang, Xiaoxuan, Li, Ying, He, Jun, Li, Chuanyou, Cheng, Zhukuan, Zuo, Jianru, Ren, Jianfeng, Zhao, Jiuhai, Yan, Liuhua, Jiang, Hongling, Wang, Bao, Li, Hongshuang, Li, Zhenjun, Fu, Fuyou, Chen, Bingtang, Han, Bin, Feng, Qi, Fan, Danlin, Wang, Ying, Ling, Hongqing, Xue, Yongbiao, Ware, Doreen, Richard McCombie, W., Lippman, Zachary B., Chia, Jer-Ming, Jiang, Ke, Pasternak, Shiran, Gelley, Laura, Kramer, Melissa, Anderson, Lorinda K., Chang, Song-Bin, Royer, Suzanne M., Shearer, Lindsay A., Stack, Stephen M., Rose, Jocelyn K. 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M., Feron, Richard M. C., Van Oeveren, Jan, De Heer, Peter, Da Ponte, Lorena, Jacobs-Oomen, Saskia, Cariaso, Mike, Prins, Marcel, Van Eijk, Michiel J. T., Janssen, Antoine, Van Haaren, J. J., -HwanJo, Sung, Kim, Jungeun, Kwon, Suk-Yoon, Kim, Sangmi, Koo, Dal-Hoe, Lee, Sanghyeob, Clouser, Christopher, Rico, Alain, Hallab, Asis, Gebhardt, Christiane, Klee, Kathrin, Jöcker, Anika, Warfsmann, Jens, Göbel, Ulrike, Kawamura, Shingo, Yano, Entaro, Sherman, Jamie D., Fukuoka, Hiroyuki, Negoro, Satomi, Bhutty, Sarita, Chowdhury, Parul, Chattopadhyay, Debasis, Datema, Erwin, Smit, Sandra, Schijlen, Elio G.W.M., Van De Belt, Jose, Van Haarst, Jan C., Peters, Sander A., Van Staveren, Marjo J., Henkens, Marleen H. C., Mooyman, Paul J. W., Hesselink, Thamara, Van Ham, Roeland C. H. J., Jiang, Guoyong, Droege, Marcus, Choi, Doil, Kang, Byung-Cheol, Kim, Byung Dong, Park, Minkyu, Kim, Seungill, Yeom, Seon-In, Lee, Yong-Hwan, Choi, Yang-Do, Li, Guangcun, Gao, Jianwei, Liu, Yongsheng, Huang, Shengxiong, Fernandez-Pedrosa, Victoria, Collado, Carmen, Zuñ Iga, Sheila, Wang, Guoping, Cade, Rebecca, Dietrich, Robert A., Rogers, Jane, Knapp, Sandra, Fei, Zhangjun, White, Ruth A., Thannhauser, Theodore W., Giovannoni, James J., Botella, Miguel Angel, Gilbert, Louise, Gonzalez, Fabra Ramon, Goicoechea, Jose Luis, Yu, Yeisoo, Kudrna, David, Collura, Kristi, Wissotski, Marina, Wing, Rod, Meyers, Blake C., Gurazada, Aishwarya Bala, Green, Pamela J., Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh K., Dalmay, Tamas, Mohorianu, Irina, Walts, Brandon, Chamala, Srikar, Barbazuk, W. Brad, Li, Jingping, Guo, Hui, Lee, Tae-Ho, Wang, Yupeng, Zhang, Dong, Paterson, Andrew H., Wang, Xiyin, Tang, Haibao, Barone, Amalia, Chiusano, Maria Luisa, Ercolano, Maria Raffaella, D'Agostino, Nunzio, Di Filippo, Miriam, Traini, Alessandra, Sanseverino, Walter, Frusciante, Luigi, Seymour, Graham B., Elharam, Mounir, Fu, Ying, Hua, Axin, Kenton, Steven, Lewis, Jennifer, Lin, Shaoping, Najar, Fares, Lai, Hongshing, Qin, Baifang, Shi, Ruihua, Qu, Chunmei, White, Douglas, White, James, Xing, Yanbo, Yang, Keqin, Yi, Jing, Yao, Ziyun, Zhou, Liping, Roe, Bruce A., Vezzi, Alessandro, D'Angelo, Michela, Zimbello, Rosanna, Schiavon, Riccardo, Caniato, Elisa, Rigobello, Chiara, Campagna, Davide, Vitulo, Nicola, Valle, Giorgio, Nelson, David R., De Paoli, Emanuele, Szinay, Dora, De Jong, Hans H., Bai, Yuling, Visser, Richard G. F., Lankhorst, Reném Klein, Beasley, Helen, McLaren, Karen, Nicholson, Christine, Riddle, Claire, Gianese, Giulio and The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485 7400: 635-641. doi:10.1038/nature11119
Figueira, Thais Rezende E Silva, Okura, Vagner, Rodrigues Da Silva, Felipe, Jose Da Silva, Marcio, Kudrna, Dave, Ammiraju, Jetty S.S., Talag, Jayson, Wing, Rod and Arruda, Paulo (2012) A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. BMC Research Notes, 5 . doi:10.1186/1756-0500-5-185
Ha, Jungmin, Abernathy, Brian, Nelson, William, Grant, David, Wu, Xiaolei, Nguyen, Henry T., Stacey, Gary, Yu, Yeisoo, Wing, Rod A., Shoemaker, Randy C. and Jackson, Scott A. (2012) Integration of the draft sequence and physical map as a framework for genomic research in soybean (Glycine max (l.) merr.) and wild soybean (Glycine soja Sieb. and Zucc.). G3: Genes, Genomes, Genetics, 2 3: 321-329. doi:10.1534/g3.111.001834
Lin, Haiyan, Xia, Peng, Wing, Rod A., Zhang, Qifa and Luo, Meizhong (2012) Dynamic intra-japonica subspecies variation and resource application. Molecular Plant, 5 1: 218-230. doi:10.1093/mp/ssr085
Jacquemin, J., Chaparro, C., Laudié, M., Berger, A., Gavory, F., Goicoechea, J. L., Wing, R. A. and Cooke, R. (2011) Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species. Molecular Biology and Evolution, 28 11: 3139-3150. doi:10.1093/molbev/msr144
Fan, Chuanzhu, Walling, Jason G., Zhang, Jianwei, Hirsch, Cory D., Jiang, Jiming and Wing, Rod A. (2011) Conservation and purifying selection of transcribed genes located in a rice centromere. Plant Cell, 23 8: 2821-2830. doi:10.1105/tpc.111.085605
Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Sanyal, Abhijit, Kim, Hyeran, Collura, Kristi, Brar, Darshan S., Jackson, Scott, Wing, Rod A. and Panaud, Olivier (2011) Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice (Genome Research (2006) 16, (1262-1269)). Genome Research, 21 7: .
Zuccolo, Andrea, Bowers, John E., Estill, James C., Xiong, Zhiyong, Luo, Meizhong, Sebastian, Aswathy, Goicoechea, José L., Collura, Kristi, Yu, Yeisoo, Jiao, Yuannian, Duarte, Jill, Tang, Haibao, Ayyampalayam, Saravanaraj, Rounsley, Steve, Kudrna, Dave, Paterson, Andrew H., Pires, J C., Chanderbali, Andre, Soltis, Douglas E., Chamala, Srikar, Barbazuk, Brad, Soltis, Pamela S., Albert, Victor A., Ma, Hong, Mandoli, Dina, Banks, Jody, Carlson, John E., Tomkins, Jeffrey, dePamphilis, Claude W., Wing, Rod A. and Leebens-Mack, Jim (2011) A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure. Genome Biology, 12 5: . doi:10.1186/gb-2011-12-5-r48
Song, Xiang, Goicoechea, Jose Luis, Ammiraju, Jetty S. S., Luo, Meizhong, He, Ruifeng, Lin, Jinke, Lee, So-Jeong, Sisneros, Nicholas, Watts, Tom, Kudrna, David A., Golser, Wolfgang, Ashley, Elizabeth, Collura, Kristi, Braidotti, Michele, Yu, Yeisoo, Matzkin, Luciano M., McAllister, Bryant F., Markow, Therese Ann and Wing, Rod A. (2011) The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research. Genetics, 187 4: 1023-1030. doi:10.1534/genetics.111.126540
Blair, Matthew W., Hurtado, Natalia, Chavarro, Carolina M., Muñoz-Torres, Monica C., Giraldo, Martha C., Pedraza, Fabio, Tomkins, Jeff and Wing, Rod (2011) Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series. BMC Plant Biology, 11 . doi:10.1186/1471-2229-11-50
Tian, Zhixi, Yu, Yanjun, Lin, Feng, Yu, Yeisoo, SanMiguel, Phillip J., Wing, Rod A., McCouch, Susan R., Ma, Jianxin and Jackson, Scott A. (2011) Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. BMC Genomics, 12 . doi:10.1186/1471-2164-12-142
Wing, Rod A., Lin, Jinke and Kudrna, Dave (2011) Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis). Journal of Biomedicine and Biotechnology, 2011 . doi:10.1155/2011/476723
Paiva, Jorge A. P., Prat, Elisa, Vautrin, Sonia, Santos, Mauro D., San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo G. S., Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty S. S., Kudrna, David, Wing, Rod A., Freitas, Ana T., Bergès, Hélène and Grima-Pettenati, Jacqueline (2011) Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. BMC Genomics, 12 . doi:10.1186/1471-2164-12-137
Argout, Xavier, Salse, Jerome, Aury, Jean-Marc, Guiltinan, Mark J., Droc, Gaetan, Gouzy, Jerome, Allegre, Mathilde, Chaparro, Cristian, Legavre, Thierry, Maximova, Siela N., Abrouk, Michael, Murat, Florent, Fouet, Olivier, Poulain, Julie, Ruiz, Manuel, Roguet, Yolande, Rodier-Goud, Maguy, Barbosa-Neto, Jose Fernandes, Sabot, Francois, Kudrna, Dave, Ammiraju, Jetty Siva S., Schuster, Stephan C., Carlson, John E., Sallet, Erika, Schiex, Thomas, Dievart, Anne, Kramer, Melissa, Gelley, Laura, Shi, Zi, Bérard, Aurélie, Viot, Christopher, Boccara, Michel, Risterucci, Ange Marie, Guignon, Valentin, Sabau, Xavier, Axtell, Michael J., Ma, Zhaorong, Zhang, Yufan, Brown, Spencer, Bourge, Mickael, Golser, Wolfgang, Song, Xiang, Clement, Didier, Rivallan, Ronan, Tahi, Mathias, Akaza, Joseph Moroh, Pitollat, Bertrand, Gramacho, Karina, D'Hont, Anglique, Brunel, Dominique, Infante, Diogenes, Kebe, Ismael, Costet, Pierre, Wing, Rod, McCombie, W Richard, Guiderdoni, Emmanuel, Quetier, Francis, Panaud, Olivier, Wincker, Patrick, Bocs, Stephanie and Lanaud, Claire (2011) The genome of Theobroma cacao. Nature Genetics, 43 2: 101-108. doi:10.1038/ng.736
Ammiraju, Jetty S.S., Song, Xiang, Luo, Meizhong, Sisneros, Nicholas, Angelova, Angelina, Kudrna, David, Kim, Hyeran, Yu, Yeisoo, Goicoechea, Jose Luis, Lorieux, Mathias, Kurata, Nori, Brar, Darshan, Ware, Doreen, Jackson, Scott and Wing, Rod A. (2010) The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives. Breeding Science, 60 5: 536-543. doi:10.1270/jsbbs.60.536
Henry, Robert J., Rice, Nicole, Waters, Daniel L. E., Kasem, Shabana, Ishikawa, Ryuji, Hao, Yin, Dillon, Sally, Crayn, Darren, Wing, Rod and Vaughan, Duncan (2010) Australian Oryza: utility and conservation. Rice, 3 4: 235-241. doi:10.1007/s12284-009-9034-y
Zuccolo, Andrea, Sebastian, Aswathy, Yu, Yeisoo, Jackson, Scott, Rounsley, Steve, Billheimer, Dean and Wing, Rod A. (2010) Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima. Rice, 3 4: 242-250. doi:10.1007/s12284-010-9046-7
Febrer, Melanie, Goicoechea, Jose Luis, Wright, Jonathan, McKenzie, Neil, Song, Xiang, Lin, Jinke, Collura, Kristi, Wissotski, Marina, Yu, Yeisoo, Ammiraju, Jetty S. S., Wolny, Elzbieta, Idziak, Dominika, Betekhtin, Alexander, Kudrna, Dave, Hasterok, Robert, Wing, Rod A. and Bevan, Michael W. (2010) An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research. PLoS ONE, 5 10: e13461. doi:10.1371/journal.pone.0013461
Sanyal, Abhijit, Ammiraju, Jetty S.S., Lu, Fei, Yu, Yeisoo, Rambo, Teri, Currie, Jennifer, Kollura, Kristi, Kim, Hye-Ran, Chen, Jinfeng, Ma, Jianxin, San Miguel, Phillip, Mingsheng, Chen, Wing, Rod A. and Jackson, Scott A. (2010) Orthologous comparisons of the Hd1 region across genera reveal hd1 gene lability within diploid oryza species and disruptions to microsynteny in sorghum. Molecular Biology and Evolution, 27 11: 2487-2506. doi:10.1093/molbev/msq133
Geraldes, Armando, Rambo, Teri, Wing, Rod A., Ferrand, Nuno and Nachman, Michael W. (2010) Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution, 27 11: 2437-2440. doi:10.1093/molbev/msq139
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Gao, Dongying, Gill, Navdeep, Kim, Hye-Ran, Walling, Jason G, Zhang, Wenli, Fan, Chuanzhu, Yu, Yeisoo, Ma, Jianxin, Sanmiguel, Phillip, Jiang, Ning, Cheng, Zhukuan, Wing, Rod A., Jiang, Jiming and Jackson, Scott A. (2009) A lineage-specific centromere retrotransposon in Oryza brachyantha. Plant Journal, 60 5: 820-831. doi:10.1111/j.1365-313X.2009.04005.x
Schnable, Patrick S., Ware, Doreen, Fulton, Robert S., Stein, Joshua C., Wei, Fusheng, Pasternak, Shiran, Liang, Chengzhi, Zhang, Jianwei, Fulton, Lucinda, Graves, Tina A., Minx, Patrick, Reily, Amy Denise, Courtney, Laura, Kruchowski, Scott S., Tomlinson, Chad, Strong, Cindy, Delehaunty, Kim, Fronick, Catrina, Courtney, Bill, Rock, Susan M., Belter, Eddie, Du, Feiyu, Kim, Kyung, Abbott, Rachel M., Cotton, Marc, Levy, Andy, Marchetto, Pamela, Ochoa, Kerri, Jackson, Stephanie M., Gillam, Barbara, Chen, Weizu, Yan, Le, Higginbotham, Jamey, Cardenas, Marco, Waligorski, Jason, Applebaum, Elizabeth, Phelps, Lindsey, Falcone, Jason, Kanchi, Krishna, Thane, Thynn, Scimone, Adam, Thane, Nay, Henke, Jessica, Wang, Tom, Ruppert, Jessica, Shah, Neha, Rotter, Kelsi, Hodges, Jennifer, Ingenthron, Elizabeth, Cordes, Matt, Kohlberg, Sara, Sgro, Jennifer, Delgado, Brandon, Mead, Kelly, Chinwalla, Asif, Leonard, Shawn, Crouse, Kevin, Collura, Kristi, Kudrna, Dave, Currie, Jennifer, He, Ruifeng, Angelova, Angelina, Rajasekar, Shanmugam, Mueller, Teri, Lomeli, Rene, Scara, Gabriel, Ko, Ara, Delaney, Krista, Wissotski, Marina, Lopez, Georgina, Campos, David, Braidotti, Michele, Ashley, Elizabeth, Golser, Wolfgang, Kim, Hyeran, Lee, Seunghee, Lin, Jinke, Dujmic, Zeljko, Kim, Woojin, Talag, Jayson, Zuccolo, Andrea, Fan, Chuanzhu, Sebastian, Aswathy, Kramer, Melissa, Spiegel, Lori, Nascimento, Lidia, Zutavern, Theresa, Miller, Beth, Ambroise, Claude, Muller, Stephanie, Spooner, Will, Narechania, Apurva, Ren, Liya, Wei, Sharon, Kumari, Sunita, Faga, Ben, Levy, Michael J., McMahan, Linda, Van Buren, Peter, Vaughn, Matthew W., Ying, Kai, Yeh, Cheng-Ting, Emrich, Scott J., Jia, Yi, Kalyanaraman, Ananth, Hsia, An-Ping, Barbazuk, W. Brad, Baucom, Regina S., Brutnell, Thomas P., Carpita, Nicholas C., Chaparro, Cristian, Chia, Jer-Ming, Deragon, Jean-Marc, Estill, James C., Fu, Yan, Jeddeloh, Jeffrey A., Han, Yujun, Lee, Hyeran, Li, Pinghua, Lisch, Damon R., Liu, Sanzhen, Liu, Zhijie, Nagel, Dawn Holligan, McCann, Maureen C., Sanmiguel, Phillip, Myers, Alan M., Nettleton, Dan, Nguyen, John, Penning, Bryan W., Ponnala, Lalit, Schneider, Kevin L., Schwartz, David C., Sharma, Anupma, Soderlund, Carol, Springer, Nathan M., Sun, Qi, Wang, Hao, Waterman, Michael, Westerman, Richard, Wolfgruber, Thomas K., Yang, Lixing, Yu, Yeisoo, Zhang, Lifang, Zhou, Shiguo, Zhu, Qihui, Bennetzen, Jeffrey L., Dawe, R. Kelly, Jiang, Jiming, Jiang, Ning, Presting, Gernot G., Wessler, Susan R., Aluru, Srinivas, Martienssen, Robert A., Clifton, Sandra W., McCombie, W. Richard, Wing, Rod A. and Wilson, Richard K. (2009) The B73 maize genome: Complexity, diversity, and dynamics. Science, 326 5956: 1112-1115. doi:10.1126/science.1178534
Wei, Fusheng, Stein, Joshua C., Liang, Chengzhi, Zhang, Jianwei, Fulton, Robert S., Baucom, Regina S., De Paoli, Emanuele, Zhou, Shiguo, Yang, Lixing, Han, Yujun, Pasternak, Shiran, Narechania, Apurva, Zhang, Lifang, Yeh, Cheng-Ting, Ying, Kai, Nagel, Dawn H., Collura, Kristi, Kudrna, David, Currie, Jennifer, Lin, Jinke, Kim, HyeRan, Angelova, Angelina, Scara, Gabriel, Wissotski, Marina, Golser, Wolfgang, Courtney, Laura, Kruchowski, Scott, Graves, Tina A., Rock, Susan M., Adams, Stephanie, Fulton, Lucinda A., Fronick, Catrina, Courtney, William, Kramer, Melissa, Spiegel, Lori, Nascimento, Lydia, Kalyanaraman, Ananth, Chaparro, Cristian, Deragon, Jean-Marc, Miguel, Phillip San, Jiang, Ning, Wessler, Susan R., Green, Pamela J., Yu, Yeisoo, Schwartz, David C., Meyers, Blake C., Bennetzen, Jeffrey L., Martienssen, Robert A., McCombie, W. Richard, Aluru, Srinivas, Clifton, Sandra W., Schnable, Patrick S., Ware, Doreen, Wilson, Richard K. and Wing, Rod A. (2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genetics, 5 11: e1000728. doi:10.1371/journal.pgen.1000728
Zhou, Shiguo, Wei, Fusheng, Nguyen, John, Bechner, Mike, Potamousis, Konstantinos, Goldstein, Steve, Pape, Louise, Mehan, Michael R., Churas, Chris, Pasternak, Shiran, Forrest, Dan K., Wise, Roger, Ware, Doreen, Wing, Rod A., Waterman, Michael S., Livny, Miron and Schwartz, David C. (2009) A single molecule scaffold for the maize genome. PLoS Genetics, 5 11: e1000711. doi:10.1371/journal.pgen.1000711
Wei, Fusheng, Zhang, Jianwei, Zhou, Shiguo, He, Ruifeng, Schaeffer, Mary, Collura, Kristi, Kudrna, David, Faga, Ben P., Wissotski, Marina, Golser, Wolfgang, Rock, Susan M., Graves, Tina A., Fulton, Robert S., Coe, Ed, Schnable, Patrick S., Schwartz, David C., Ware, Doreen, Clifton, Sandra W., Wilson, Richard K. and Wing, Rod A. (2009) The physical and genetic framework of the maize B73 genome. PLoS Genetics, 5 11: e1000715. doi:10.1371/journal.pgen.1000715
Cranston, Karen A., Hurwitz, Bonnie, Ware, Doreen, Stein, Lincoln and Wing, Rod A. (2009) Species trees from highly incongruent gene trees in rice. Systematic Biology, 58 5: 489-500. doi:10.1093/sysbio/syp054
Nah, Gyoungju, Pagliarulo, Christopher L., Mohr, Peter G., Luo, Meizhong, Sisneros, Nick, Yu, Yeisoo, Collura, Kristi, Currie, Jennifer, Goicoechea, Jose Luis, Wing, Rod A. and Schumaker, Karen S. (2009) Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana. Genomics, 94 3: 196-203. doi:10.1016/j.ygeno.2009.05.007
Meier, Stuart, Gehring, Chris, MacPherson, Cameron Ross, Kaur, Mandeep, Maqungo, Monique, Reuben, Sheela, Muyanga, Samson, Shih, Ming-Der, Wei, Fu-Jin, Wanchana, Samart, Mauleon, Ramil, Radovanovic, Aleksandar, Bruskiewich, Richard, Tanaka, Tsuyoshi, Mohanty, Bijayalaxmi, Itoh, Takeshi, Wing, Rod, Gojobori, Takashi, Sasaki, Takuji, Swarup, Sanjay, Hsing, Yue-ie and Bajic, Vladimir B. (2008) The promoter signatures in rice LEA genes can be used to build a co-expressing LEA gene network. Rice, 1 2: 177-187. doi:10.1007/s12284-008-9017-4
Shoemaker, Randy C., Grant, David, Olson, Terry, Warren, Wesley C., Wing, Rod, Yu, Yeisoo, Kim, Hyeran, Cregan, Perry, Joseph, Bindu, Futrell-Griggs, Montona, Nelson, Will, Davito, Jon, Walker, Jason, Wallis, John, Kremitski, Colin, Scheer, Debbie, Clifton, Sandra W., Graves, Tina, Nguyen, Henry, Wu, Xiaolei, Luo, Mingcheng, Dvorak, Jan, Nelson, Rex, Cannon, Steven, Tomkins, Jeff, Schmutz, Jeremy, Stacey, Gary and Jackson, Scott (2008) Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps. Genome, 51 4: 294-302. doi:10.1139/G08-010
Soltis, Douglas E., Albert, Victor A., Leebens-Mack, Jim, Palmer, Jeffrey D., Wing, Rod A., dePamphilis, Claude W., Ma, Hong, Carlson, John E., Altman, Naomi, Kim, Sangtae, Kerr, P. Kerr, Zuccolo, Andrea and Soltis, Pamela S. (2008) The Amborella genome: An evolutionary reference for plant biology. Genome Biology, 9 3: . doi:10.1186/gb-2008-9-3-402
Qu, Shaohong, Desai, Aparna, Wing, Rod and Sundaresan, Venkatesan (2008) A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants. Plant Physiology, 146 1: 189-199. doi:10.1104/pp.107.111427
Clark, Andrew G., Eisen, Michael B., Smith, Douglas R., Bergman, Casey M., Oliver, Brian, Markow, Therese A., Kaufman, Thomas C., Kellis, Manolis, Gelbart, William, Iyer, Venky N., Pollard, Daniel A., Sackton, Timothy B., Larracuente, Amanda M., Singh, Nadia D., Abad, Jose P., Abt, Dawn N., Adryan, Boris, Aguade, Montserrat, Akashi, Hiroshi, Anderson, Wyatt W., Aquadro, Charles F., Ardell, David H., Arguello, Roman, Artieri, Carlo G., Barbash, Daniel A., Barker, Daniel, Barsanti, Paolo, Batterham, Phil, Batzoglou, Serafim, Begun, Dave, Bhutkar, Arjun, Blanco, Enrico, Bosak, Stephanie A., Bradley, Robert K., Brand, Adrianne D., Brent, Michael R., Brooks, Angela N., Brown, Randall H., Butlin, Roger K., Caggese, Corrado, Calvi, Brian R., Bernardo De Carvalho, A., Caspi, Anat, Castrezana, Sergio, Celniker, Susan E., Chang, Jean L., Chapple, Charles, Chatterji, Sourav, Chinwalla, Asif, Civetta, Alberto, Clifton, Sandra W., Comeron, Josep M., Costello, James C., Coyne, Jerry A., Daub, Jennifer, David, Robert G., Delcher, Arthur L., Delehaunty, Kim, Do, Chuong B., Ebling, Heather, Edwards, Kevin, Eickbush, Thomas, Evans, Jay D., Filipski, Alan, Findeiß, Sven, Freyhult, Eva, Fulton, Lucinda, Fulton, Robert, Garcia, Ana C. 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Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, Kudrna, Dave and Wing, Rod A. (2007) Transposable element distribution, abundance and role in genome size variation in the genus Oryza. BMC Evolutionary Biology, 7 . doi:10.1186/1471-2148-7-152
Ma, Jianxin, Wing, Rod A., Bennetzen, Jeffrey L. and Jackson, Scott A. (2007) Evolutionary history and positional shift of a rice centromere. Genetics, 177 2: 1217-1220. doi:10.1534/genetics.107.078709
Liang, Haiying, Fang, Eric G., Tomkins, Jeffrey P., Luo, Meizhong, Kudrna, David, Kim, Hye Ran, Arumuganathan, K., Zhao, Shaying, Leebens-Mack, James, Schlarbaum, Scott E., Banks, Jo Ann, Depamphilis, Claude W., Mandoli, Dina F., Wing, Rod A. and Carlson, John E. (2007) Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis. Tree Genetics and Genomes, 3 3: 215-225. doi:10.1007/s11295-006-0057-x
Wei, Fusheng, Coe, Ed, Nelson, William, Bharti, Arvind K., Engler, Fred, Butler, Ed, Kim, HyeRan, Goicoechea, Jose Luis, Chen, Mingsheng, Lee, Seunghee, Fuks, Galina, Sanchez-Villeda, Hector, Schroeder, Steven, Fang, Zhiwei, McMullen, Michael, Davis, Georgia, Bowers, John E., Paterson, Andrew H., Schaeffer, Mary, Gardiner, Jack, Cone, Karen, Messing, Joachim, Soderlund, Carol and Wing, Rod A. (2007) Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genetics, 3 7: 1254-1263. doi:10.1371/journal.pgen.0030123
Kim, HyeRan, San Miguel, Phillip, Nelson, William, Collura, Kristi, Wissotski, Marina, Walling, Jason G., Jun, Pyo Kim, Jackson, Scott A., Soderlund, Carol and Wing, Rod A. (2007) Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics, 176 1: 379-390. doi:10.1534/genetics.106.068783
Ma, Jianxin, Wing, Rod A., Bennetzen, Jeffrey L. and Jackson, Scott A. (2007) Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics, 23 3: 134-139. doi:10.1016/j.tig.2007.01.004
Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., Antonio, Baltazar A., Aono, Hideo, Apweiler, Rolf, Bruskiewich, Richard, Bureau, Thomas, Burr, Frances, De Oliveira, Antonio Costa, Fuks, Galina, Habara, Takuya, Haberer, Georg, Han, Bin, Harada, Erimi, Hiraki, Aiko T., Hirochika, Hirohiko, Hoen, Douglas, Hokari, Hiroki, Hosokawa, Satomi, Hsing, Yue-Ie, Ikawa, Hiroshi, Ikeo, Kazuho, Imanishi, Tadashi, Ito, Yukiyo, Jaiswal, Pankaj, Kanno, Masako, Kawahara, Yoshihiro, Kawamura, Toshiyuki, Kawashima, Hiroaki, Khurana, Jitendra P., Kikuchi, Shoshi, Komatsu, Setsuko, Koyanagi, Kanako O., Kubooka, Hiromi, Lieberherr, Damien, Lin, Yao-Cheng, Lonsdale, David, Matsumoto, Takashi, Matsuya, Akihiro, McCombie, W. Richard, Messing, Joachim, Miyao, Akio, Mulder, Nicola, Nagamura, Yoshiaki, Nam, Jongmin, Namiki, Nobukazu, Numa, Hisataka, Nurimoto, Shin, O'Donovan, Claire, Ohyanagi, Hajime, Okido, Toshihisa, OOta, Satoshi, Osato, Naoki, Palmer, Lance E., Quetier, Francis, Raghuvanshi, Saurabh, Saichi, Naomi, Sakai, Hiroaki, Sakai, Yasumichi, Sakata, Katsumi, Sakurai, Tetsuya, Sato, Fumihiko, Sato, Yoshiharu, Schoof, Heiko, Seki, Motoaki, Shibata, Michie, Shimizu, Yuji, Shinozaki, Kazuo, Shinso, Yuji, Singh, Nagendra K., Smith-White, Brian, Takeda, Jun-Ichi, Tanino, Motohiko, Tatusova, Tatiana, Thongjuea, Supat, Todokoro, Fusano, Tsugane, Mika, Tyagi, Akhilesh K., Vanavichit, Apichart, Wang, Aihui, Wing, Rod A., Yamaguchi, Kaori, Yamamoto, Mayu, Yamamoto, Naoyuki, Yu, Yeisoo, Zhang, Hao, Zhao, Qiang, Higo, Kenichi, Burr, Benjamin, Gojobori, Takashi and Sasaki, Takuji (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project. Genome Research, 17 2: 175-183. doi:10.1101/gr.5509507
Nelson, William M., Dvorak, Jan, Luo, Ming-Cheng, Messing, Joachim, Wing, Rod A. and Soderlund, Carol (2007) Efficacy of clone fingerprinting methodologies. Genomics, 89 1: 160-165. doi:10.1016/j.ygeno.2006.08.008
Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Saniyal, Abhijit, Kim, Hyeran, Collura, Kristi, Brar, Darshan S., Jackson, Scott, Wing, Rod A. and Panaud, Olivier (2006) Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research, 16 10: 1262-1269. doi:10.1101/gr.5290206
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Hass-Jacobus, Barbara L., Futrell-Griggs, Montona, Abernathy, Brian, Westerman, Rick, Goicoechea, Jose-Luis, Stein, Joshua, Klein, Patricia, Hurwitz, Bonnie, Zhou, Bin, Rakhshan, Fariborz, Sanyal, Abhijit, Gill, Navdeep, Lin, Jer-Young, Walling, Jason G., Luo, Mei Zhong, Ammiraju, Jetty Siva S., Kudrna, Dave, Kim, Hye Ran, Ware, Doreen, Wing, Rod A., San Miguel, Phillip and Jackson, Scott A. (2006) Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum. BMC Genomics, 7 . doi:10.1186/1471-2164-7-199
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Jantasuriyarat, Chatchawan, Gowda, Malali, Haller, Karl, Hatfield, Jamie, Lu, Guodong, Stahlberg, Eric, Zhou, Bo, Li, Huameng, Kim, HyRan, Yu, Yeisoo, Dean, Ralph A., Wing, Rod A., Soderlund, Carol and Wang, Guo-Liang (2005) Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology, 138 1: 105-115. doi:10.1104/pp.104.055624
Nelson, William M., Bharti, Arvind K., Butler, Ed, Wei, Fusheng, Fuks, Galina, Kim, HyeRan, Wing, Rod A., Messing, Joachim and Soderlund, Carol (2005) Whole-genome validation of high-information-content fingerprinting. Plant Physiology, 139 1: 27-38. doi:10.1104/pp.105.061978
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Yang, Tae-Jin, Yu, Yeisoo, Chang, Song-Bin, De Jong, Hans, Oh, Chang-Sik, Ahn, Sang-Nag, Fang, Eric and Wing, Rod A. (2005) Toward closing rice telomere gaps: Mapping and sequence characterization of rice subtelomere regions. Theoretical and Applied Genetics, 111 3: 467-478. doi:10.1007/s00122-005-2034-4
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Conference Paper
Adema, Coen M., Luo, Mei-Zhong, Hanelt, Ben, Hertel, Lynn A., Marshall, Jennifer J., Zhang, Si-Ming, DeJong, Randall J., Kim, Hye-Ran, Kudrna, David, Wing, Rod A., Soderlund, Cari, Knight, Matty, Lewis, Fred A., Caldeira, Roberta Lima, Jannotti-Passos, Liana K., Carvalho, Omar Dos Santos and Loker, Eric S. (2006). A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni. In: , , (167-177). . doi:10.1590/S0074-02762006000900027