Publications
Journal Articles
Wang, Wensheng, Mauleon, Ramil, Hu, Zhiqiang, Chebotarov, Dmytro, Tai, Shuaishuai, Wu, Zhichao, Li, Min, Zheng, Tianqing, Fuentes, Roven Rommel, Zhang, Fan, Mansueto, Locedie, Copetti, Dario, Sanciangco, Millicent, Palis, Kevin Christian, Xu, Jianlong, Sun, Chen, Fu, Binying, Zhang, Hongliang, Gao, Yongming, Zhao, Xiuqin, Shen, Fei, Cui, Xiao, Yu, Hong, Li, Zichao, Chen, Miaolin, Detras, Jeffrey, Zhou, Yongli, Zhang, Xinyuan, Zhao, Yue, Kudrna, Dave, Wang, Chunchao, Li, Rui, Jia, Ben, Lu, Jinyuan, He, Xianchang, Dong, Zhaotong, Xu, Jiabao, Li, Yanhong, Wang, Miao, Shi, Jianxin, Li, Jing, Zhang, Dabing, Lee, Seunghee, Hu, Wushu, Poliakov, Alexander, Dubchak, Inna, Ulat, Victor Jun, Borja, Frances Nikki, Mendoza, John Robert, Ali, Jauhar, Gao, Qiang, Niu, Yongchao, Yue, Zhen, Naredo, Ma. Elizabeth B., Talag, Jayson, Wang, Xueqiang, Li, Jinjie, Fang, Xiaodong, Yin, Ye, Glaszmann, Jean-Christophe, Zhang, Jianwei, Li, Jiayang, Hamilton, Ruaraidh Sackville, Wing, Rod A., Ruan, Jue, Zhang, Gengyun, Wei, Chaochun, Alexandrov, Nickolai, McNally, Kenneth L., Li, Zhikang and Leung, Hei (2018) Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature, 557 7703: 43-49. doi:10.1038/s41586-018-0063-9
Bhatia, Dharminder, Wing, Rod A., Yu, Yeisoo, Chougule, Kapeel, Kudrna, Dave, Lee, Seunghee, Rang, Allah and Singh, Kuldeep (2018) Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length. Euphytica, 214 2: . doi:10.1007/s10681-018-2119-1
Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos, Wu, Cheng-chieh, Kao, Shu-min, Zeng, Jhih-wun, Wei, Fu-jin, Zhao, Qiang, Feng, Qi, El Baidouri, Moaine, Carpentier, Marie-Christine, Lasserre, Eric, Cooke, Richard, Rosa Farias, Daniel Da, da Maia, Luciano Carlos, Dos Santos, Railson S., Nyberg, Kevin G., McNally, Kenneth L., Mauleon, Ramil, Alexandrov, Nickolai, Schmutz, Jeremy, Flowers, Dave, Fan, Chuanzhu, Weigel, Detlef, Jena, Kshirod K., Wicker, Thomas, Chen, Mingsheng, Han, Bin, Henry, Robert, Hsing, Yue-ie C., Kurata, Nori, de Oliveira, Antonio Costa, Panaud, Olivier, Jackson, Scott A., Machado, Carlos A., Sanderson, Michael J., Long, Manyuan, Ware, Doreen and Wing, Rod A. (2018) Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 2: 285-296. doi:10.1038/s41588-018-0040-0
dos Santos, Railson Schreinert, Farias, Daniel da Rosa, Pegoraro, Camila, Rombaldi, Cesar Valmor, Fukao, Takeshi, Wing, Rod A. and de Oliveira, Antonio Costa (2017) Evolutionary analysis of the SUB1 locus across the Oryza genomes. Rice, 10 1: . doi:10.1186/s12284-016-0140-3
Copetti, Dario, Búrquez, Alberto, Bustamante, Enriquena, Charboneau, Joseph L. M., Childs, Kevin L., Eguiarte, Luis E., Lee, Seunghee, Liu, Tiffany L., McMahon, Michelle M., Whiteman, Noah K., Wing, Rod A., Wojciechowski, Martin F. and Sanderson, Michael J. (2017) Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. Proceedings of the National Academy of Sciences of the United States of America, 114 45: 12003-12008. doi:10.1073/pnas.1706367114
Harkess, Alex, Zhou, Jinsong, Xu, Chunyan, Bowers, John E, Van der Hulst, Ron, Ayyampalayam, Saravanaraj, Mercati, Francesco, Riccardi, Paolo, McKain, Michael R, Kakrana, Atul, Tang, Haibao, Ray, Jeremy, Groenendijk, John, Arikit, Siwaret, Mathioni, Sandra M, Nakano, Mayumi, Shan, Hongyan, Telgmann-Rauber, Alexa, Kanno, Akira, Yue, Zhen, Chen, Haixin, Li, Wenqi, Chen, Yanling, Xu, Xiangyang, Zhang, Yueping, Luo, Shaochun, Chen, Helong, Gao, Jianming, Mao, Zichao, Pires, J Chris, Luo, Meizhong, Kudrna, Dave, Wing, Rod A, Meyers, Blake C, Yi, Kexian, Kong, Hongzhi, Lavrijsen, Pierre, Sunseri, Francesco, Falavigna, Agostino, Ye, Yin, Leebens-Mack, James H and Chen, Guangyu (2017) The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications, 8 1: 1279. doi:10.1038/s41467-017-01064-8
Brozynska, Marta, Copetti, Dario, Furtado, Agnelo, Wing, Rod A., Crayn, Darren, Fox, Glen, Ishikawa, Ryuji and Henry, Robert J. (2017) Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. Plant Biotechnology Journal, 15 6: 765-774. doi:10.1111/pbi.12674
Wu, Wenguang, Liu, Xiaoyun, Wang, Muhua, Meyer, Rachel S., Luo, Xiaojin, Ndjiondjop, Marie-Noelle, Tan, Lubin, Zhang, Jianwei, Wu, Jianzhong, Cai, Hongwei, Sun, Chuanqing, Wang, Xiangkun, Wing, Rod A. and Zhu, Zuofeng (2017) A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. Nature Plants, 3 . doi:10.1038/nplants.2017.64
Choi, Jae Young, Platts, Adrian E., Fuller, Dorian Q., Hsing, Yue-Ie, Wing, Rod A., Purugganan, Michael D. and Kim, Yuseob (2017) The rice paradox: multiple origins but single domestication in Asian Rice. Molecular Biology and Evolution, 34 4: 969-979. doi:10.1093/molbev/msx049
Thakare, Dhiraj, Zhang, Jianwei, Wing, Rod A., Cotty, Peter J. and Schmidt, Monica A. (2017) Aflatoxin-free transgenic maize using host-induced gene silencing. Science Advances, 3 3: e1602382. doi:10.1126/sciadv.1602382
Mansueto, Locedie, Fuentes, Roven Rommel, Borja, Frances Nikki, Detras, Jeffery, Abrio-Santos, Juan Miguel, Chebotarov, Dmytro, Sanciangco, Millicent, Palis, Kevin, Copetti, Dario, Poliakov, Alexandre, Dubchak, Inna, Solovyev, Victor, Wing, Rod A., Hamilton, Ruaraidh Sackville, Mauleon, Ramil, McNally, Kenneth L. and Alexandrov, Nickolai (2017) Rice SNP-seek database update: New SNPs, indels, and queries. Nucleic Acids Research, 45 D1: D1075-D1081. doi:10.1093/nar/gkw1135
Copetti, Dario and Wing, Rod A. (2016) The dark side of the genome: revealing the native transposable element/repeat content of Eukaryotic genomes. Molecular Plant, 9 12: 1664-1666. doi:10.1016/j.molp.2016.09.006
Van Andel, Tinde R., Meyer, Rachel S., Aflitos, Saulo A., Carney, Judith A., Veltman, Margaretha A., Copetti, Dario, Flowers, Jonathan M., Havinga, Reinout M., Maat, Harro, Purugganan, Michael D., Wing, Rod A. and Schranz, M. Eric (2016) Tracing ancestor rice of Suriname Maroons back to its African origin. Nature Plants, 2 10: . doi:10.1038/nplants.2016.149
Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A. and Roffler, Stefan (2016) DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications, 7 . doi:10.1038/ncomms12790
Zhang, Jianwei, Chen, Ling-Ling, Xing, Feng, Kudrna, David A., Yao, Wen, Copetti, Dario, Mu, Ting, Li, Weiming, Song, Jia-Ming, Xie, Weibo, Lee, Seunghee, Talag, Jayson, Shao, Lin, An, Yue, Zhang, Chun-Liu, Ouyang, Yidan, Sun, Shuai, Jiao, Wen-Biao, Lv, Fang, Du, Bogu, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Zhou, Zhi-Wei, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A. and Zhang, Qifa (2016) Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences, 113 35: E5163-E5171. doi:10.1073/pnas.1611012113
Ray, Soham, Bose, Lotan K., Ray, Joshitha, Ngangkham, Umakanta, Katara, Jawahar L., Samantaray, Sanghamitra, Behera, Lambodar, Anumalla, Mahender, Singh, Onkar N., Chen, Meingsheng, Wing, Rod A. and Mohapatra, Trilochan (2016) Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha. Molecular Genetics and Genomics, 291 4: 1783-1794. doi:10.1007/s00438-016-1214-z
De Vega, Jose J., Ayling, Sarah, Hegarty, Matthew, Kudrna, Dave, Goicoechea, Jose L., Ergon, Åshild, Rognli, Odd A., Jones, Charlotte, Swain, Martin, Geurts, Rene, Lang, Chunting, Mayer, Klaus F. X., Rössner, Stephan, Yates, Steven, Webb, Kathleen J., Donnison, Iain S., Oldroyd, Giles E. D., Wing, Rod A., Caccamo, Mario, Powell, Wayne, Abberton, Michael T. and Skøt, Leif (2015) Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement. Scientific Reports, 5 . doi:10.1038/srep17394
Kim, Kyunghee, Lee, Sang-Choon, Lee, Junki, Yu, Yeisoo, Yang, Kiwoung, Choi, Beom-Soon, Koh, Hee-Jong, Waminal, Nomar Espinosa, Choi, Hong-Il, Kim, Nam-Hoon, Jang, Woojong, Park, Hyun-Seung, Lee, Jonghoon, Lee, Hyun Oh, Joh, Ho Jun, Lee, Hyeon Ju, Park, Jee Young, Perumal, Sampath, Jayakodi, Murukarthick, Lee, Yun Sun, Kim, Backki, Copetti, Dario, Kim, Soonok, Kim, Sunggil, Lim, Ki-Byung, Kim, Young-Dong, Lee, Jungho, Cho, Kwang-Su, Park, Beom-Seok, Wing, Rod A. and Yang, Tae-Jin (2015) Complete chloroplast and ribosomal sequences for 30 accessions elucidate evolution of Oryza AA genome species. Scientific Reports, 5 . doi:10.1038/srep15655
Copetti, Dario, Zhang, Jianwei, El Baidouri, Moaine, Gao, Dongying, Wang, Jun, Barghini, Elena, Cossu, Rosa M., Angelova, Angelina, Maldonado L., Carlos E., Roffler, Stefan, Ohyanagi, Hajime, Wicker, Thomas, Fan, Chuanzhu, Zuccolo, Andrea, Chen, Mingsheng, Costa de Oliveira, Antonio, Han, Bin, Henry, Robert, Hsing, Yue-ie, Kurata, Nor, Wang, Wen, Jackson, Scott A., Panaud, Olivier and Wing, Rod A. (2015) RiTE database: A resource database for genus-wide rice genomics and evolutionary biology. BMC Genomics, 16 1: 538-538. doi:10.1186/s12864-015-1762-3
Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi and Teycheney, Pierre-Yves (2014) Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications, 5 1: 5269.1-5269.11. doi:10.1038/ncomms6269
Wang, Muhua, Yu, Yeisoo, Haberer, Georg, Marri, Pradeep Reddy, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Song, Xiang, Kudrna, Dave, Ammiraju, Jetty S.S., Cossu, Rosa Maria, Maldonado, Carlos, Chen, Jinfeng, Lee, Seunghee, Sisneros, Nick, De Baynast, Kristi, Golser, Wolfgang, Wissotski, Marina, Kim, Woojin, Sanchez, Paul, Ndjiondjop, Marie-Noelle, Sanni, Kayode, Long, Manyuan, Carney, Judith, Panaud, Olivier, Wicker, Thomas, MacHado, Carlos A., Chen, Mingsheng, Mayer, Klaus F.X., Rounsley, Steve and Wing, Rod A. (2014) The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication. Nature Genetics, 46 9: 982-988. doi:10.1038/ng.3044
DePamphilis, Claude W., Palmer, Jeffrey D., Rounsley, Steve, Sankoff, David, Schuster, Stephan C., Ammiraju, Jetty S. S., Barbazuk, W. Bradley, Chamala, Srikar, Chanderbali, Andre S., Determann, Ronald, Hong, Ma., Ralph, Paula, Talag, Jason, Tomsho, Lynn, Walts, Brandon, Wanke, Stefan, Wing, Rod A., Chang, Tien-Hao, Lan, Tianying, Soltis, Douglas E., Arikit, Siwaret, Axtell, Michael J., Ayyampalayam, Saravanaraj, Burnette III, James M., De Paoli, Emanuele, Farrell, Nina P., Harkess, Alex, Jiao, Yuannian, Leebens-Mack, James, Liu, Kun, Mei, Wenbin, Meyers, Blake C., Shahid, Saima, Wafula, Eric, Wessler, Susan R., Zhai, Jixian, Zhang, Xiaoyu, Albert, Victor A., Carretero-Paulet, Lorenzo, Lyons, Eric, Tang, Haibao, Zheng, Chunfang, Altman, Naomi S., Chen, Feng, Chen, Jian-Qun, Chiang, Vincent, Der, Joshua P., Fogliani, Bruno, Guo, Chunce, Harholt, Jesper, Job, Claudette, Job, Dominique, Kim, Sangtae, Kong, Hongzhi, Li, Guanglin, Li, N., Liu, Jie, Park, Jongsun, Qi, Xinshuai, Rajjou, Loïc, Burtet-Sarramegna, Valérie, Sederoff, Ron, Sun, Ying-Hsuan, Ulvskov, Peter, Villegente, Matthieu, Xue, Jia-Yu, Yeh, Ting-Feng, Yu, Xianxian, Acosta, Juan J., Bruenn, Riva A., De Kochko, Alexandre, Herrera-Estrella, Luis R., Ibarra-Laclette, Enrique, Kirst, Matias, Pissis, Solon P., Poncet, Valérie and Soltis, Pamela S. (2013) The Amborella genome and the evolution of flowering plants. Science, 342 6165: . doi:10.1126/science.1241089
Chamala, Srikar, Chanderbali, Andre S., Der, Joshua P., Lan, Tianying, Walts, Brandon, Albert, Victor A., DePamphilis, Claude W., Leebens-Mack, Jim, Rounsley, Steve, Schuster, Stephan C., Wing, Rod A., Xiao, Nianqing, Moore, Richard, Soltis, Pamela S., Soltis, Douglas E. and Barbazuk, W. Brad (2013) Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science, 342 6165: 1516-1517. doi:10.1126/science.1241130
Wang, Chao, Shi, Xue, Liu, Lin, Li, Haiyan, Ammiraju, Jetty S.S., Kudrna, David A., Xiong, Wentao, Wang, Hao, Dai, Zhaozhao, Zheng, Yonglian, Lai, Jinsheng, Jin, Weiwei, Messing, Joachim, Bennetzen, Jeffrey L., Wing, Rod A. and Luo, Meizhong (2013) Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics, 195 3: 723-737. doi:10.1534/genetics.113.157115
Dereeper, Alexis, Guyot, Romain, Tranchant-Dubreuil, Christine, Anthony, François, Argout, Xavier, de Bellis, Fabien, Combes, Marie-Christine, Gavory, Frederick, de Kochko, Alexandre, Kudrna, Dave, Leroy, Thierry, Poulain, Julie, Rondeau, Myriam, Song, Xiang, Wing, Rod and Lashermes, Philippe (2013) BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology, 83 3: 177-189. doi:10.1007/s11103-013-0077-5
Singh, Rajinder, Ong-Abdullah, Meilina, Low, Eng-Ti Leslie, Manaf, Mohamad Arif Abdul, Rosli, Rozana, Nookiah, Rajanaidu, Ooi, Leslie Cheng-Li, Ooi, Siew-Eng, Chan, Kuang-Lim, Halim, Mohd Amin, Azizi, Norazah, Nagappan, Jayanthi, Bacher, Blaire, Lakey, Nathan, Smith, Steven W., He, Dong, Hogan, Michael, Budiman, Muhammad A., Lee, Ernest K., Desalle, Rob, Kudrna, David, Goicoechea, Jose Luis, Wing, Rod A., Wilson, Richard K., Fulton, Robert S., Ordway, Jared M., Martienssen, Robert A. and Sambanthamurthi, Ravigadevi (2013) Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds. Nature, 500 7462: 335-339. doi:10.1038/nature12309
Chen, Jinfeng, Huang, Quanfei, Gao, Dongying, Wang, Junyi, Lang, Yongshan, Liu, Tieyan, Li, Bo, Bai, Zetao, Luis Goicoechea, Jose, Liang, Chengzhi, Chen, Chengbin, Zhang, Wenli, Sun, Shouhong, Liao, Yi, Zhang, Xuemei, Yang, Lu, Song, Chengli, Wang, Meijiao, Shi, Jinfeng, Liu, Geng, Liu, Junjie, Zhou, Heling, Zhou, Weili, Yu, Qiulin, An, Na, Chen, Yan, Cai, Qingle, Wang, Bo, Liu, Binghang, Min, Jiumeng, Huang, Ying, Wu, Honglong, Li, Zhenyu, Zhang, Yong, Yin, Ye, Song, Wenqin, Jiang, Jiming, Jackson, Scott A., Wing, Rod A., Waang, Jun and Chen, Mingsheng (2013) Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications, 4 1: . doi:10.1038/ncomms2596
Mayer, Klaus F. X., Waugh, Robbie, Langridge, Peter, Close, Timothy J., Wise, Roger P., Graner, Andreas, Matsumoto, Takashi, Sato, Kazuhiro, Schulman, Alan, Ariyadasa, Ruvini, Schulte, Daniela, Poursarebani, Naser, Zhou, Ruonan, Steuernagel, Burkhard, Mascher, Martin, Scholz, Uwe, Shi, Bujun, Madishetty, Kavitha, Svensson, Jan T., Bhat, Prasanna, Moscou, Matthew, Resnik, Josh, Muehlbauer, Gary J., Hedley, Pete, Liu, Hui, Morris, Jenny, Frenkel, Zeev, Korol, Avraham, Bergès, Hélène, Taudien, Stefan, Felder, Marius, Groth, Marco, Platzer, Matthias, Himmelbach, Axel, Lonardi, Stefano, Duma, Denisa, Alpert, Matthew, Cordero, Francesa, Beccuti, Marco, Ciardo, Gianfranco, Ma, Yaqin, Wanamaker, Steve, Cattonaro, Federica, Vendramin, Vera, Scalabrin, Simone, Radovic, Slobodanka, Wing, Rod, Morgante, Michele, Nussbaumer, Thomas, Gundlach, Heidrun, Martis, Mihaela, Poland, Jesse, Pfeifer, Matthias, Moisy, Cédric, Tanskanen, Jaakko, Zuccolo, Andrea, Spannagl, Manuel, Russell, Joanne, Druka, Arnis, Marshall, David, Bayer, Micha, Swarbreck, David, Sampath, Dharanya, Ayling, Sarah, Febrer, Melanie, Caccamo, Mario, Tanaka, Tsuyoshi, Wannamaker, Steve, Schmutzer, Thomas, Brown, John W. S., Fincher, Geoffrey B. and Stein, Nils (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature, 491 7426: 711-716. doi:10.1038/nature11543
Ha, Jungmin, Abernathy, Brian, Nelson, William, Grant, David, Wu, Xiaolei, Nguyen, Henry T., Stacey, Gary, Yu, Yeisoo, Wing, Rod A., Shoemaker, Randy C. and Jackson, Scott A. (2012) Integration of the draft sequence and physical map as a framework for genomic research in soybean (Glycine max (l.) merr.) and wild soybean (Glycine soja Sieb. and Zucc.). G3: Genes, Genomes, Genetics, 2 3: 321-329. doi:10.1534/g3.111.001834
Tian, Zhixi, Yu, Yanjun, Lin, Feng, Yu, Yeisoo, SanMiguel, Phillip J., Wing, Rod A., McCouch, Susan R., Ma, Jianxin and Jackson, Scott A. (2011) Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. BMC Genomics, 12 . doi:10.1186/1471-2164-12-142
Wing, Rod A., Lin, Jinke and Kudrna, Dave (2011) Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis). Journal of Biomedicine and Biotechnology, 2011 . doi:10.1155/2011/476723
Paiva, Jorge A. P., Prat, Elisa, Vautrin, Sonia, Santos, Mauro D., San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo G. S., Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty S. S., Kudrna, David, Wing, Rod A., Freitas, Ana T., Bergès, Hélène and Grima-Pettenati, Jacqueline (2011) Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. BMC Genomics, 12 . doi:10.1186/1471-2164-12-137
Argout, Xavier, Salse, Jerome, Aury, Jean-Marc, Guiltinan, Mark J., Droc, Gaetan, Gouzy, Jerome, Allegre, Mathilde, Chaparro, Cristian, Legavre, Thierry, Maximova, Siela N., Abrouk, Michael, Murat, Florent, Fouet, Olivier, Poulain, Julie, Ruiz, Manuel, Roguet, Yolande, Rodier-Goud, Maguy, Barbosa-Neto, Jose Fernandes, Sabot, Francois, Kudrna, Dave, Ammiraju, Jetty Siva S., Schuster, Stephan C., Carlson, John E., Sallet, Erika, Schiex, Thomas, Dievart, Anne, Kramer, Melissa, Gelley, Laura, Shi, Zi, Bérard, Aurélie, Viot, Christopher, Boccara, Michel, Risterucci, Ange Marie, Guignon, Valentin, Sabau, Xavier, Axtell, Michael J., Ma, Zhaorong, Zhang, Yufan, Brown, Spencer, Bourge, Mickael, Golser, Wolfgang, Song, Xiang, Clement, Didier, Rivallan, Ronan, Tahi, Mathias, Akaza, Joseph Moroh, Pitollat, Bertrand, Gramacho, Karina, D'Hont, Anglique, Brunel, Dominique, Infante, Diogenes, Kebe, Ismael, Costet, Pierre, Wing, Rod, McCombie, W Richard, Guiderdoni, Emmanuel, Quetier, Francis, Panaud, Olivier, Wincker, Patrick, Bocs, Stephanie and Lanaud, Claire (2011) The genome of Theobroma cacao. Nature Genetics, 43 2: 101-108. doi:10.1038/ng.736
Ma, Jianxin, Wing, Rod A., Bennetzen, Jeffrey L. and Jackson, Scott A. (2007) Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics, 23 3: 134-139. doi:10.1016/j.tig.2007.01.004
Matsumoto, Takashi, Wu, Jianzhong, Kanamori, Hiroyuki, Katayose, Yuichi, Fujisawa, Masaki, Namiki, Nobukazu, Mizuno, Hiroshi, Yamamoto, Kimiko, Antonio, Baltazar A., Baba, Tomoya, Sakata, Katsumi, Nagamura, Yoshiaki, Aoki, Hiroyoshi, Arikawa, Koji, Arita, Kohei, Bito, Takahito, Chiden, Yoshino, Fujitsuka, Nahoko, Fukunaka, Rie, Hamada, Masao, Harada, Chizuko, Hayashi, Akiko, Hijishita, Saori, Honda, Mikiko, Hosokawa, Satomi, Ichikawa, Yoko, Idonuma, Atsuko, Iijima, Masumi, Ikeda, Michiko, Ikeno, Maiko, Ito, Kazue, Ito, Sachie, Ito, Tomoko, Ito, Yuichi, Ito, Yukiyo, Iwabuchi, Aki, Kamiya, Kozue, Karasawa, Wataru, Kurita, Kanako, Katagiri, Satoshi, Kikuta, Ari, Kobayashi, Harumi, Kobayashi, Noriko, MacHita, Kayo, Maehara, Tomoko, Masukawa, Masatoshi, Mizubayashi, Tatsumi, Mukai, Yoshiyuki, Nagasaki, Hideki, Nagata, Yuko, Naito, Shinji, Nakashima, Marina, Nakama, Yuko, Nakamichi, Yumi, Nakamura, Mari, Meguro, Ayano, Negishi, Manami, Ohta, Isamu, Ohta, Tomoya, Okamoto, Masako, Ono, Nozomi, Saji, Shoko, Sakaguchi, Miyuki, Sakai, Kumiko, Shibata, Michie, Shimokawa, Takanori, Song, Jianyu, Takazaki, Yuka, Terasawa, Kimihiro, Tsugane, Mika, Tsuji, Kumiko, Ueda, Shigenori, Waki, Kazunori, Yamagata, Harumi, Yamamoto, Mayu, Yamamoto, Shinichi, Yamane, Hiroko, Yoshiki, Shoji, Yoshihara, Rie, Yukawa, Kazuko, Zhong, Huisun, Yano, Masahiro, Sasaki, Takuji, Yuan, Qiaoping, Ouyang, Shu, Liu, Jia, Jones, Kristine M., Gansberger, Kristen, Moffat, Kelly, Hill, Jessica, Bera, Jayati, Fadrosh, Douglas, Jin, Shaohua, Johri, Shivani, Kim, Mary, Overton, Larry, Reardon, Matthew, Tsitrin, Tamara, Vuong, Hue, Weaver, Bruce, Ciecko, Anne, Tallon, Luke, Jackson, Jacqueline, Pai, Grace, Van Aken, Susan, Utterback, Terry, Reidmuller, Steve, Feldblyum, Tamara, Hsiao, Joseph, Zismann, Victoria, Iobst, Stacey, De Vazeille, Aymeric R., Buell, C. Robin, Ying, Kai, Li, Ying, Lu, Tingting, Huang, Yuchen, Zhao, Qiang, Feng, Qi, Zhang, Lei, Zhu, Jingjie, Weng, Qijun, Mu, Jie, Lu, Yiqi, Fan, Danlin, Liu, Yilei, Guan, Jianping, Zhang, Yujun, Yu, Shuliang, Liu, Xiaohui, Zhang, Yu, Hong, Guofan, Han, Bin, Choisne, Nathalie, Demange, Nadia, Orjeda, Gisela, Samain, Sylvie, Cattolico, Laurence, Pelletier, Eric, Couloux, Arnaud, Segurens, Beatrice, Wincker, Patrick, D'Hont, Angelique, Scarpelli, Claude, Weissenbach, Jean, Salanoubat, Marcel, Quetier, Francis, Yu, Yeisoo, Kim, Hye Ran, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Luo, Meizhong, Yang, Tae-Jin, Ammiraju, Jetty S. S., Engler, Friedrich, Soderlund, Carol, Wing, Rod A., Palmer, Lance E., De La Bastide, Melissa, Spiegel, Lori, Nascimento, Lidia, Zutavern, Theresa, O'Shaughnessy, Andrew, Dike, Sujit, Dedhia, Neilay, Preston, Raymond, Balija, Vivekanand, McCombie, W. Richard, Chow, Teh-Yuan, Chen, Hong-Hwa, Chung, Mei-Chu, Chen, Ching-San, Shaw, Jei-Fu, Wu, Hong-Pang, Hsiao, Kwang-Jen, Chao, Ya-Ting, Chu, Mu-Kuei, Cheng, Chia-Hsiung, Hour, Ai-Ling, Lee, Pei-Fang, Lin, Shu-Jen, Lin, Yao-Cheng, Liou, John-Yu, Liu, Shu-Mei, Hsing, Yue-Ie, Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Ravi, V., Vij, S., Kapur, A., Khurana, Parul, Khurana, Paramjit, Khurana, J. P., Tyagi, A. K., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S., Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Batra, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Messing, Joachim, Nelson, Amy Bronzino, Fuks, Galina, Kavchok, Steve, Keizer, Gladys, Llaca, Eric Linton Victor, Song, Rentao, Tanyolac, Bahattin, Young, Steve, Ho, Kim, Hahn, Jang Ho, Sangsakoo, G., Vanavichit, A., De Mattos, Luiz Anderson Teixeira, Zimmer, Paulo Dejalma, Malone, Gaspar, Dellagostin, Odir, De Oliveira, Antonio Costa, Bevan, Michael, Bancroft, Ian, Minx, Pat, Cordum, Holly, Wilson, Richard, Cheng, Zhukuan, Jin, Weiwei, Jiang, Jiming, Leong, Sally Ann, Iwama, Hisakazu, Gojobori, Takashi, Itoh, Takeshi, Niimura, Yoshihito, Fujii, Yasuyuki, Habara, Takuya, Sakai, Hiroaki, Sato, Yoshiharu, Wilson, Greg, Kumar, Kiran, McCouch, Susan, Juretic, Nikoleta, Hoen, Douglas, Wright, Stephen, Bruskiewich, Richard, Bureau, Thomas, Miyao, Akio, Hirochika, Hirohiko, Nishikawa, Tomotaro, Kadowaki, Koh-Ichi, Sugiura, Masahiro and Burr, Benjamin (2005) The map-based sequence of the rice genome. Nature, 436 7052: 793-800. doi:10.1038/nature03895
Horn, Renate, Lecouls, Anne-Claire, Callahan, Ann, Dandekar, Abhaya, Garay, Lilibeth, McCord, Per, Howad, Werner, Chan, Helen, Verde, Ignazio, Main, Doreen, Jung, Sook, Georgi, Laura, Forrest, Sam, Mook, Jennifer, Zhebentyayeva, Tatyana, Yu, Yeisoo, Hye, Ran Kim, Jesudurai, Christopher, Sosinski, Bryon, Arús, Pere, Baird, Vance, Parfitt, Dan, Reighard, Gregory, Scorza, Ralph, Tomkins, Jeffrey, Wing, Rod and Abbott, Albert Glenn (2005) Candidate gene database and transcript map for peach, a model species for fruit trees. Theoretical and Applied Genetics, 110 8: 1419-1428. doi:10.1007/s00122-005-1968-x