Professor Rod Wing

Zhang, Qifa and Wing, Rod A. Genetics and genomics of rice. Edited by Zhang, Qifa and Wing, Rod A. New York, NY: Springer New York, 2013. doi:10.1007/978-1-4614-7903-1

Yu, Yanchun, Wing, Rod A. and Li, Jiayang (2013). Grain quality. In Qifa Zhang and Rod A. Wing (Ed.), Genetics and genomics of rice (pp. 237-254) New York, NY, United States: Springer New York. doi:10.1007/978-1-4614-7903-1_16

Wing, Rod A., Kim, Hyeran, Goicoechea, Jose Luis, Yu, Yeisoo, Kudrna, Dave, Zuccolo, Andrea, Ammiraju, Jetty Siva S., Luo, Meizhong, Nelson, Will, Ma, Jianxin, Sanmiguel, Phillip, Hurwitz, Bonnie, Ware, Doreen, Brar, Darshan, Mackill, David, Soderlund, Cari, Stein, Lincoln and Jackson, Scott (2007). The oryza map alignment project (OMAP): a new resource for comparative genome studies within oryza. In Rice Functional Genomics: Challenges, Progress and Prospects (pp. 395-409) New York, NY, United States: Springer New York. doi:10.1007/0-387-48914-2_15

Mangu, Venkata R., Ratnasekera, Disna, Yabes, Jonalyn C., Wing, Rod A. and Baisakh, Niranjan (2019) Functional screening of genes from a halophyte wild rice relative Porteresia coarctata in Arabidopsis model identifies candidate genes involved in salt tolerance. Current Plant Biology, 18 100107. doi:10.1016/j.cpb.2019.100107

Fuentes, Roven Rommel, Chebotarov, Dmytro, Duitama, Jorge, Smith, Sean, De la Hoz, Juan Fernando, Mohiyuddin, Marghoob, Wing, Rod A., McNally, Kenneth L., Tatarinova, Tatiana, Grigoriev, Andrey, Mauleon, Ramil and Alexandrov, Nickolai (2019) Structural variants in 3000 rice genomes. Genome Research, 29 5: 870-880. doi:10.1101/gr.241240.118

Chen, Erwang, Huang, Xuehui, Tian, Zhixi, Wing, Rod A. and Han, Bin (2019) The Genomics of Oryza Species Provides Insights into Rice Domestication and Heterosis. Annual Review of Plant Biology, 70 1: 639-665. doi:10.1146/annurev-arplant-050718-100320

Zhang, Li, Ren, Yan, Yang, Tao, Li, Guangwei, Chen, Jianhai, Gschwend, Andrea R., Yu, Yeisoo, Hou, Guixue, Zi, Jin, Zhou, Ruo, Wen, Bo, Zhang, Jianwei, Chougule, Kapeel, Wang, Muhua, Copetti, Dario, Peng, Zhiyu, Zhang, Chengjun, Zhang, Yong, Ouyang, Yidan, Wing, Rod A., Liu, Siqi and Long, Manyuan (2019) Rapid evolution of protein diversity by de novo origination in Oryza. Nature Ecology & Evolution, 3 4: 679-690. doi:10.1038/s41559-019-0822-5

Kim, Nam-Hoon, Jayakodi, Murukarthick, Lee, Sang-Choon, Choi, Beom-Soon, Jang, Woojong, Lee, Junki, Kim, Hyun Hee, Waminal, Nomar E., Lakshmanan, Meiyappan, van Nguyen, Binh, Lee, Yun Sun, Park, Hyun-Seung, Koo, Hyun Jo, Park, Jee Young, Perumal, Sampath, Joh, Ho Jun, Lee, Hana, Kim, Jinkyung, Kim, In Seo, Kim, Kyunghee, Koduru, Lokanand, Kang, Kyo Bin, Sung, Sang Hyun, Yu, Yeisoo, Park, Daniel S., Choi, Doil, Seo, Eunyoung, Kim, Seungill, Kim, Young-Chang, Hyun, Dong Yun, Park, Youn-Il, Kim, Changsoo, Lee, Tae-Ho, Kim, Hyun Uk, Soh, Moon Soo, Lee, Yi, In, Jun Gyo, Kim, Heui-Soo, Kim, Yong-Min, Yang, Deok-Chun, Wing, Rod A., Lee, Dong-Yup, Paterson, Andrew H. and Yang, Tae-Jin (2018) Genome and evolution of the shade-requiring medicinal herb Panax ginseng. Plant Biotechnology Journal, 16 11: 1904-1917. doi:10.1111/pbi.12926

Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos, Wu, Cheng-chieh, Kao, Shu-min, Zeng, Jhih-wun, Wei, Fu-jin, Zhao, Qiang, Feng, Qi, El Baidouri, Moaine, Carpentier, Marie-Christine, Lasserre, Eric, Cooke, Richard, da Rosa Farias, Daniel, da Maia, Luciano Carlos, dos Santos, Railson S., Nyberg, Kevin G., McNally, Kenneth L., Mauleon, Ramil, Alexandrov, Nickolai, Schmutz, Jeremy, Flowers, Dave, Fan, Chuanzhu, Weigel, Detlef, Jena, Kshirod K., Wicker, Thomas, Chen, Mingsheng, Han, Bin, Henry, Robert, Hsing, Yue-ie C., Kurata, Nori, de Oliveira, Antonio Costa, Panaud, Olivier, Jackson, Scott A., Machado, Carlos A., Sanderson, Michael J., Long, Manyuan, Ware, Doreen and Wing, Rod A. (2018) Publisher Correction: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 11: 1618-1618. doi:10.1038/s41588-018-0261-2

Wing, Rod A., Purugganan, Michael D. and Zhang, Qifa (2018) The rice genome revolution: from an ancient grain to Green Super Rice. Nature Reviews Genetics, 19 8: 505-517. doi:10.1038/s41576-018-0024-z

Liao, Yi, Zhang, Xuemei, Li, Bo, Liu, Tieyan, Chen, Jinfeng, Bai, Zetao, Wang, Meijiao, Shi, Jinfeng, Walling, Jason G., Wing, Rod A., Jiang, Jiming and Chen, Mingsheng (2018) Comparison of Oryza sativa and Oryza brachyantha genomes reveals selection-driven gene escape from the centromeric Regions. The Plant Cell, 30 8: 1729-1744. doi:10.1105/tpc.18.00163

Lv, Shuwei, Wu, Wenguang, Wang, Muhua, Meyer, Rachel S., Ndjiondjop, Marie-Noelle, Tan, Lubin, Zhou, Haiying, Zhang, Jianwei, Fu, Yongcai, Cai, Hongwei, Sun, Chuanqing, Wing, Rod A. and Zhu, Zuofeng (2018) Genetic control of seed shattering during African rice domestication. Nature Plants, 4 6: 331-337. doi:10.1038/s41477-018-0164-3

Wang, Wensheng, Mauleon, Ramil, Hu, Zhiqiang, Chebotarov, Dmytro, Tai, Shuaishuai, Wu, Zhichao, Li, Min, Zheng, Tianqing, Fuentes, Roven Rommel, Zhang, Fan, Mansueto, Locedie, Copetti, Dario, Sanciangco, Millicent, Palis, Kevin Christian, Xu, Jianlong, Sun, Chen, Fu, Binying, Zhang, Hongliang, Gao, Yongming, Zhao, Xiuqin, Shen, Fei, Cui, Xiao, Yu, Hong, Li, Zichao, Chen, Miaolin, Detras, Jeffrey, Zhou, Yongli, Zhang, Xinyuan, Zhao, Yue, Kudrna, Dave, Wang, Chunchao, Li, Rui, Jia, Ben, Lu, Jinyuan, He, Xianchang, Dong, Zhaotong, Xu, Jiabao, Li, Yanhong, Wang, Miao, Shi, Jianxin, Li, Jing, Zhang, Dabing, Lee, Seunghee, Hu, Wushu, Poliakov, Alexander, Dubchak, Inna, Ulat, Victor Jun, Borja, Frances Nikki, Mendoza, John Robert, Ali, Jauhar, Gao, Qiang, Niu, Yongchao, Yue, Zhen, Naredo, Ma. Elizabeth B., Talag, Jayson, Wang, Xueqiang, Li, Jinjie, Fang, Xiaodong, Yin, Ye, Glaszmann, Jean-Christophe, Zhang, Jianwei, Li, Jiayang, Hamilton, Ruaraidh Sackville, Wing, Rod A., Ruan, Jue, Zhang, Gengyun, Wei, Chaochun, Alexandrov, Nickolai, McNally, Kenneth L., Li, Zhikang and Leung, Hei (2018) Genomic variation in 3,010 diverse accessions of Asian cultivated rice. Nature, 557 7703: 43-49. doi:10.1038/s41586-018-0063-9

Bhatia, Dharminder, Wing, Rod A., Yu, Yeisoo, Chougule, Kapeel, Kudrna, Dave, Lee, Seunghee, Rang, Allah and Singh, Kuldeep (2018) Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length. Euphytica, 214 2: . doi:10.1007/s10681-018-2119-1

Stein, Joshua C., Yu, Yeisoo, Copetti, Dario, Zwickl, Derrick J., Zhang, Li, Zhang, Chengjun, Chougule, Kapeel, Gao, Dongying, Iwata, Aiko, Goicoechea, Jose Luis, Wei, Sharon, Wang, Jun, Liao, Yi, Wang, Muhua, Jacquemin, Julie, Becker, Claude, Kudrna, Dave, Zhang, Jianwei, Londono, Carlos E. M., Song, Xiang, Lee, Seunghee, Sanchez, Paul, Zuccolo, Andrea, Ammiraju, Jetty S. S., Talag, Jayson, Danowitz, Ann, Rivera, Luis F., Gschwend, Andrea R., Noutsos, Christos, Wu, Cheng-chieh, Kao, Shu-min, Zeng, Jhih-wun, Wei, Fu-jin, Zhao, Qiang, Feng, Qi, El Baidouri, Moaine, Carpentier, Marie-Christine, Lasserre, Eric, Cooke, Richard, Rosa Farias, Daniel Da, da Maia, Luciano Carlos, Dos Santos, Railson S., Nyberg, Kevin G., McNally, Kenneth L., Mauleon, Ramil, Alexandrov, Nickolai, Schmutz, Jeremy, Flowers, Dave, Fan, Chuanzhu, Weigel, Detlef, Jena, Kshirod K., Wicker, Thomas, Chen, Mingsheng, Han, Bin, Henry, Robert, Hsing, Yue-ie C., Kurata, Nori, de Oliveira, Antonio Costa, Panaud, Olivier, Jackson, Scott A., Machado, Carlos A., Sanderson, Michael J., Long, Manyuan, Ware, Doreen and Wing, Rod A. (2018) Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza. Nature Genetics, 50 2: 285-296. doi:10.1038/s41588-018-0040-0

dos Santos, Railson Schreinert, Farias, Daniel da Rosa, Pegoraro, Camila, Rombaldi, Cesar Valmor, Fukao, Takeshi, Wing, Rod A. and de Oliveira, Antonio Costa (2017) Evolutionary analysis of the SUB1 locus across the Oryza genomes. Rice, 10 1: . doi:10.1186/s12284-016-0140-3

Copetti, Dario, Búrquez, Alberto, Bustamante, Enriquena, Charboneau, Joseph L. M., Childs, Kevin L., Eguiarte, Luis E., Lee, Seunghee, Liu, Tiffany L., McMahon, Michelle M., Whiteman, Noah K., Wing, Rod A., Wojciechowski, Martin F. and Sanderson, Michael J. (2017) Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti. Proceedings of the National Academy of Sciences of the United States of America, 114 45: 12003-12008. doi:10.1073/pnas.1706367114

Harkess, Alex, Zhou, Jinsong, Xu, Chunyan, Bowers, John E, Van der Hulst, Ron, Ayyampalayam, Saravanaraj, Mercati, Francesco, Riccardi, Paolo, McKain, Michael R, Kakrana, Atul, Tang, Haibao, Ray, Jeremy, Groenendijk, John, Arikit, Siwaret, Mathioni, Sandra M, Nakano, Mayumi, Shan, Hongyan, Telgmann-Rauber, Alexa, Kanno, Akira, Yue, Zhen, Chen, Haixin, Li, Wenqi, Chen, Yanling, Xu, Xiangyang, Zhang, Yueping, Luo, Shaochun, Chen, Helong, Gao, Jianming, Mao, Zichao, Pires, J Chris, Luo, Meizhong, Kudrna, Dave, Wing, Rod A, Meyers, Blake C, Yi, Kexian, Kong, Hongzhi, Lavrijsen, Pierre, Sunseri, Francesco, Falavigna, Agostino, Ye, Yin, Leebens-Mack, James H and Chen, Guangyu (2017) The asparagus genome sheds light on the origin and evolution of a young Y chromosome. Nature Communications, 8 1: 1279. doi:10.1038/s41467-017-01064-8

Eizenga, G. C., Sanchez, P. L., Jackson, A. K., Edwards, J. D., Hurwitz, B. L., Wing, R. A. and Kudrna, D. (2017) Genetic variation for domestication-related traits revealed in a cultivated rice, Nipponbare (Oryza sativa ssp. japonica) × ancestral rice, O. nivara, mapping population. Molecular Breeding, 37 11: . doi:10.1007/s11032-017-0734-5

Brozynska, Marta, Copetti, Dario, Furtado, Agnelo, Wing, Rod A., Crayn, Darren, Fox, Glen, Ishikawa, Ryuji and Henry, Robert J. (2017) Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice. Plant Biotechnology Journal, 15 6: 765-774. doi:10.1111/pbi.12674

Wu, Wenguang, Liu, Xiaoyun, Wang, Muhua, Meyer, Rachel S., Luo, Xiaojin, Ndjiondjop, Marie-Noelle, Tan, Lubin, Zhang, Jianwei, Wu, Jianzhong, Cai, Hongwei, Sun, Chuanqing, Wang, Xiangkun, Wing, Rod A. and Zhu, Zuofeng (2017) A single-nucleotide polymorphism causes smaller grain size and loss of seed shattering during African rice domestication. Nature Plants, 3 . doi:10.1038/nplants.2017.64

Lee, Cheng-Ruei, Wang, Baosheng, Mojica, Julius P., Mandáková, Terezie, Prasad, Kasavajhala V. S. K., Goicoechea, Jose Luis, Perera, Nadeesha, Hellsten, Uffe, Hundley, Hope N., Johnson, Jenifer, Grimwood, Jane, Barry, Kerrie, Fairclough, Tephen, Jenkins, Jerry W., Yu, Yeisoo, Kudrna, Dave, Zhang, Jianwei, Talag, Jayson, Golser, Wolfgang, Ghattas, Kathryn, Schranz, M. Eric, Wing, Rod, Lysak, Martin A., Schmutz, Jeremy, Rokhsar, Daniel S. and Mitchell-Olds, Thomas (2017) Young inversion with multiple linked QTLs under selection in a hybrid zone. Nature Ecology and Evolution, 1 5: . doi:10.1038/s41559-017-0119

Choi, Jae Young, Platts, Adrian E., Fuller, Dorian Q., Hsing, Yue-Ie, Wing, Rod A., Purugganan, Michael D. and Kim, Yuseob (2017) The rice paradox: multiple origins but single domestication in Asian Rice. Molecular Biology and Evolution, 34 4: 969-979. doi:10.1093/molbev/msx049

Thakare, Dhiraj, Zhang, Jianwei, Wing, Rod A., Cotty, Peter J. and Schmidt, Monica A. (2017) Aflatoxin-free transgenic maize using host-induced gene silencing. Science Advances, 3 3: e1602382. doi:10.1126/sciadv.1602382

Mansueto, Locedie, Fuentes, Roven Rommel, Borja, Frances Nikki, Detras, Jeffery, Abrio-Santos, Juan Miguel, Chebotarov, Dmytro, Sanciangco, Millicent, Palis, Kevin, Copetti, Dario, Poliakov, Alexandre, Dubchak, Inna, Solovyev, Victor, Wing, Rod A., Hamilton, Ruaraidh Sackville, Mauleon, Ramil, McNally, Kenneth L. and Alexandrov, Nickolai (2017) Rice SNP-seek database update: New SNPs, indels, and queries. Nucleic Acids Research, 45 D1: D1075-D1081. doi:10.1093/nar/gkw1135

Copetti, Dario and Wing, Rod A. (2016) The dark side of the genome: revealing the native transposable element/repeat content of Eukaryotic genomes. Molecular Plant, 9 12: 1664-1666. doi:10.1016/j.molp.2016.09.006

Zhang, Jianwei, Kudrna, Dave, Mu, Ting, Li, Weiming, Copetti, Dario, Yu, Yeisoo, Goicoechea, Jose Luis, Lei, Yang and Wing, Rod A. (2016) Genome puzzle master (GPM): An integrated pipeline for building and editing pseudomolecules from fragmented sequences. Bioinformatics, 32 20: 3058-3064. doi:10.1093/bioinformatics/btw370

Van Andel, Tinde R., Meyer, Rachel S., Aflitos, Saulo A., Carney, Judith A., Veltman, Margaretha A., Copetti, Dario, Flowers, Jonathan M., Havinga, Reinout M., Maat, Harro, Purugganan, Michael D., Wing, Rod A. and Schranz, M. Eric (2016) Tracing ancestor rice of Suriname Maroons back to its African origin. Nature Plants, 2 10: . doi:10.1038/nplants.2016.149

Wicker, Thomas, Yu, Yeisoo, Haberer, Georg, Mayer, Klaus F. X., Marri, Pradeep Reddy, Rounsley, Steve, Chen, Mingsheng, Zuccolo, Andrea, Panaud, Olivier, Wing, Rod A. and Roffler, Stefan (2016) DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses. Nature Communications, 7 . doi:10.1038/ncomms12790

Zhang, Jianwei, Chen, Ling-Ling, Xing, Feng, Kudrna, David A., Yao, Wen, Copetti, Dario, Mu, Ting, Li, Weiming, Song, Jia-Ming, Xie, Weibo, Lee, Seunghee, Talag, Jayson, Shao, Lin, An, Yue, Zhang, Chun-Liu, Ouyang, Yidan, Sun, Shuai, Jiao, Wen-Biao, Lv, Fang, Du, Bogu, Luo, Meizhong, Maldonado, Carlos Ernesto, Goicoechea, Jose Luis, Xiong, Lizhong, Wu, Changyin, Xing, Yongzhong, Zhou, Dao-Xiu, Yu, Sibin, Zhao, Yu, Wang, Gongwei, Yu, Yeisoo, Luo, Yijie, Zhou, Zhi-Wei, Hurtado, Beatriz Elena Padilla, Danowitz, Ann, Wing, Rod A. and Zhang, Qifa (2016) Extensive sequence divergence between the reference genomes of two elite indica rice varieties Zhenshan 97 and Minghui 63. Proceedings of the National Academy of Sciences, 113 35: E5163-E5171. doi:10.1073/pnas.1611012113

Ray, Soham, Bose, Lotan K., Ray, Joshitha, Ngangkham, Umakanta, Katara, Jawahar L., Samantaray, Sanghamitra, Behera, Lambodar, Anumalla, Mahender, Singh, Onkar N., Chen, Meingsheng, Wing, Rod A. and Mohapatra, Trilochan (2016) Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha. Molecular Genetics and Genomics, 291 4: 1783-1794. doi:10.1007/s00438-016-1214-z

Wang, Jun, Yu, Yeisoo, Tao, Feng, Zhang, Jianwei, Copetti, Dario, Kudrna, Dave, Talag, Jayson, Lee, Seunghee, Wing, Rod A. and Fan, Chuanzhu (2016) DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements. Genome Biology, 17 1: . doi:10.1186/s13059-016-0954-8

Wendel, Jonathan F., Jackson, Scott A., Meyers, Blake C. and Wing, Rod A. (2016) Evolution of plant genome architecture. Genome Biology, 17 37: . doi:10.1186/s13059-016-0908-1

Zhang, Yesheng, Zhang, Shilai, Liu, Hui, Fu, Binying, Li, Lijuan, Xie, Min, Song, Yue, Li, Xin, Cai, Jing, Wan, Wenting, Kui, Ling, Huang, Hui, Lyu, Jun, Dong, Yang, Wang, Wensheng, Huang, Liyu, Zhang, Jing, Yang, Qinzhong, Shan, Qinli, Li, Qiong, Huang, Wangqi, Tao, Dayun, Wang, Muhua, Chen, Mingsheng, Yu, Yeisoo, Wing, Rod A., Wang, Wen and Hu, Fengyi (2015) Genome and comparative transcriptomics of African wild rice Oryza longistaminata provide insights into molecular mechanism of rhizomatousness and self-incompatibility. Molecular Plant, 8 11: 1683-1686. doi:10.1016/j.molp.2015.08.006

Wing, Rod A. (2015) Harvesting rice's dispensable genome. Genome Biology, 16 1: . doi:10.1186/s13059-015-0787-x

Copetti, Dario, Zhang, Jianwei, El Baidouri, Moaine, Gao, Dongying, Wang, Jun, Barghini, Elena, Cossu, Rosa M., Angelova, Angelina, Maldonado L., Carlos E., Roffler, Stefan, Ohyanagi, Hajime, Wicker, Thomas, Fan, Chuanzhu, Zuccolo, Andrea, Chen, Mingsheng, Costa de Oliveira, Antonio, Han, Bin, Henry, Robert, Hsing, Yue-ie, Kurata, Nor, Wang, Wen, Jackson, Scott A., Panaud, Olivier and Wing, Rod A. (2015) RiTE database: A resource database for genus-wide rice genomics and evolutionary biology. BMC Genomics, 16 1: 538-538. doi:10.1186/s12864-015-1762-3

Sanderson, Michael J., Copetti, Dario, Búrquez, Alberto, Bustamante, Enriquena, Charboneau, Joseph L. M., Eguiarte, Luis E., Kumar, Sudhir, Lee, Hyun Oh, Lee, Junki, McMahon, Michelle, Steele, Kelly, Wing, Rod, Yang, Tae-Jin, Zwickl, Derrick and Wojciechowski, Martin F. (2015) Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): loss of the ndh gene suite and inverted repeat 1. American Journal of Botany, 102 7: 1115-1127. doi:10.3732/ajb.1500184

Gao, Dongying, Jiang, Ning, Wing, Rod A., Jiang, Jiming and Jackson, Scott A. (2015) Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science, 6 APR: . doi:10.3389/fpls.2015.00216

Muñoz-Amatriaín, María, Lonardi, Stefano, Luo, Mingcheng, Madishetty, Kavitha, Svensson, Jan T., Moscou, Matthew J., Wanamaker, Steve, Jiang, Tao, Kleinhofs, Andris, Muehlbauer, Gary J., Wise, Roger P., Stein, Nils, Ma, Yaqin, Rodriguez, Edmundo, Kudrna, Dave, Bhat, Prasanna R., Chao, Shiaoman, Condamine, Pascal, Heinen, Shane, Resnik, Josh, Wing, Rod, Witt, Heather N., Alpert, Matthew, Beccuti, Marco, Bozdag, Serdar, Cordero, Francesca, Mirebrahim, Hamid, Ounit, Rachid, Wu, Yonghui, You, Frank, Zheng, Jie, Simková, Hana, Dolezel, Jaroslav, Grimwood, Jane, Schmutz, Jeremy, Duma, Denisa, Altschmied, Lothar, Blake, Tom, Bregitzer, Phil, Cooper, Laurel, Dilbirligi, Muharrem, Falk, Anders, Feiz, Leila, Graner, Andreas, Gustafson, Perry, Hayes, Patrick M., Lemaux, Peggy, Mammadov, Jafar and Close, Timothy J. (2015) Sequencing of 15 622 gene-bearing BACs clarifies the gene-dense regions of the barley genome. Plant Journal, 84 1: 216-227. doi:10.1111/tpj.12959

Geering, Andrew D. W., Maumus, Florian, Copetti, Dario, Choisne, Nathalie, Zwickl, Derrick J., Zytnicki, Matthias, McTaggart, Alistair R., Scalabrin, Simone, Vezzulli, Silvia, Wing, Rod A., Quesneville, Hadi and Teycheney, Pierre-Yves (2014) Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution. Nature Communications, 5 1: 5269.1-5269.11. doi:10.1038/ncomms6269

Schmutz, Jeremy, McClean, Phillip E., Mamidi, Sujan, Wu, G Albert, Cannon, Steven B., Grimwood, Jane, Jenkins, Jerry, Shu, Shengqiang, Song, Qijian, Chavarro, Carolina, Torres-Torres, Mirayda, Geffroy, Valerie, Moghaddam, Samira Mafi, Gao, Dongying, Abernathy, Brian, Barry, Kerrie, Blair, Matthew, Brick, Mark A., Chovatia, Mansi, Gepts, Paul, Goodstein, David M., Gonzales, Michael, Hellsten, Uffe, Hyten, David L., Jia, Gaofeng, Kelly, James D., Kudrna, Dave, Lee, Rian, Richard, Manon M. S., Miklas, Phillip N., Osorno, Juan M., Rodrigues, Josiane, Thareau, Vincent, Urrea, Carlos A., Wang, Mei, Yu, Yeisoo, Zhang, Ming, Wing, Rod A., Cregan, Perry B., Rokhsar, Daniel S. and Jackson, Scott A. (2014) A reference genome for common bean and genome-wide analysis of dual domestications. Nature Genetics, 46 7: 707-713. doi:10.1038/ng.3008

Jacquemin, Julie, Ammiraju, Jetty S.S., Haberer, Georg, Billheimer, Dean D., Yu, Yeisoo, Liu, Liana C., Rivera, Luis F., Mayer, Klaus, Chen, Mingsheng and Wing, Rod A. (2014) Fifteen million years of evolution in the Oryza genus shows extensive gene family expansion. Molecular Plant, 7 4: 642-656. doi:10.1093/mp/sst149

Wang, Xiaoming, Kudrna, David A., Pan, Yonglong, Wang, Hao, Liu, Lin, Lin, Haiyan, Zhang, Jianwei, Song, Xiang, Goicoechea, Jose Luis, Wing, Rod A., Zhang, Qifa and Luo, Meizhong (2014) Global genomic diversity of Oryza sativa varieties revealed by comparative physical mapping. Genetics, 196 4: 937-949. doi:10.1534/genetics.113.159970

Pan, Yonglong, Deng, Ying, Lin, Haiyan, Kudrna, David A., Wing, Rod A., Li, Lijia, Zhang, Qifa and Luo, Meizhong (2014) Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies. Plant Journal, 77 5: 795-805. doi:10.1111/tpj.12412

Ortiz, Marianyoly, Legatzki, Antje, Neilson, Julia W., Fryslie, Brandon, Nelson, William M., Wing, Rod A., Soderlund, Carol A., Pryor, Barry M. and Maier, Raina M. (2014) Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave. ISME Journal, 8 2: 478-491. doi:10.1038/ismej.2013.159

Chamala, Srikar, Chanderbali, Andre S., Der, Joshua P., Lan, Tianying, Walts, Brandon, Albert, Victor A., DePamphilis, Claude W., Leebens-Mack, Jim, Rounsley, Steve, Schuster, Stephan C., Wing, Rod A., Xiao, Nianqing, Moore, Richard, Soltis, Pamela S., Soltis, Douglas E. and Barbazuk, W. Brad (2013) Assembly and validation of the genome of the nonmodel basal angiosperm Amborella. Science, 342 6165: 1516-1517. doi:10.1126/science.1241130

DePamphilis, Claude W., Palmer, Jeffrey D., Rounsley, Steve, Sankoff, David, Schuster, Stephan C., Ammiraju, Jetty S. S., Barbazuk, W. Bradley, Chamala, Srikar, Chanderbali, Andre S., Determann, Ronald, Hong, Ma., Ralph, Paula, Talag, Jason, Tomsho, Lynn, Walts, Brandon, Wanke, Stefan, Wing, Rod A., Chang, Tien-Hao, Lan, Tianying, Soltis, Douglas E., Arikit, Siwaret, Axtell, Michael J., Ayyampalayam, Saravanaraj, Burnette III, James M., De Paoli, Emanuele, Farrell, Nina P., Harkess, Alex, Jiao, Yuannian, Leebens-Mack, James, Liu, Kun, Mei, Wenbin, Meyers, Blake C., Shahid, Saima, Wafula, Eric, Wessler, Susan R., Zhai, Jixian, Zhang, Xiaoyu, Albert, Victor A., Carretero-Paulet, Lorenzo, Lyons, Eric, Tang, Haibao, Zheng, Chunfang, Altman, Naomi S., Chen, Feng, Chen, Jian-Qun, Chiang, Vincent, Der, Joshua P., Fogliani, Bruno, Guo, Chunce, Harholt, Jesper, Job, Claudette, Job, Dominique, Kim, Sangtae, Kong, Hongzhi, Li, Guanglin, Li, N., Liu, Jie, Park, Jongsun, Qi, Xinshuai, Rajjou, Loïc, Burtet-Sarramegna, Valérie, Sederoff, Ron, Sun, Ying-Hsuan, Ulvskov, Peter, Villegente, Matthieu, Xue, Jia-Yu, Yeh, Ting-Feng, Yu, Xianxian, Acosta, Juan J., Bruenn, Riva A., De Kochko, Alexandre, Herrera-Estrella, Luis R., Ibarra-Laclette, Enrique, Kirst, Matias, Pissis, Solon P., Poncet, Valérie and Soltis, Pamela S. (2013) The Amborella genome and the evolution of flowering plants. Science, 342 6165: . doi:10.1126/science.1241089

Wang, Chao, Shi, Xue, Liu, Lin, Li, Haiyan, Ammiraju, Jetty S.S., Kudrna, David A., Xiong, Wentao, Wang, Hao, Dai, Zhaozhao, Zheng, Yonglian, Lai, Jinsheng, Jin, Weiwei, Messing, Joachim, Bennetzen, Jeffrey L., Wing, Rod A. and Luo, Meizhong (2013) Genomic resources for gene discovery, functional genome annotation, and evolutionary studies of maize and its close relatives. Genetics, 195 3: 723-737. doi:10.1534/genetics.113.157115

Dereeper, Alexis, Guyot, Romain, Tranchant-Dubreuil, Christine, Anthony, François, Argout, Xavier, de Bellis, Fabien, Combes, Marie-Christine, Gavory, Frederick, de Kochko, Alexandre, Kudrna, Dave, Leroy, Thierry, Poulain, Julie, Rondeau, Myriam, Song, Xiang, Wing, Rod and Lashermes, Philippe (2013) BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution. Plant Molecular Biology, 83 3: 177-189. doi:10.1007/s11103-013-0077-5

Horvath, David P., Kudrna, David, Talag, Jayson, Anderson, James V., Chao, Wun S., Wing, Rod, Foley, Michael E. and Doǧramaci, Münevver (2013) BAC library development and clone characterization for dormancy-responsive DREB4A, DAM, and FT from leafy spurge (Euphorbia esula) identifies differential splicing and conserved promoter motifs. Weed Science, 61 2: 303-309. doi:10.1614/WS-D-12-00175.1

Matsuba, Yuki, Nguyen, Thuong T.H., Wiegert, Krystle, Falara, Vasiliki, Gonzales-Vigil, Eliana, Leong, Bryan, Schäfer, Petra, Kudrna, David, Wing, Rod A., Bolger, Anthony M., Usadel, Björn, Tissier, Alain, Fernie, Alisdair R., Barry, Cornelius S. and Pichersky, Eran (2013) Evolution of a complex locus for terpene biosynthesis in Solanum. Plant Cell, 25 6: 2022-2036. doi:10.1105/tpc.113.111013

Zhang, Chengjun, Wang, Jun, Marowsky, Nicholas C., Long, Manyuan, Wing, Rod A. and Fan, Chuanzhu (2013) High occurrence of functional new chimeric genes in survey of rice chromosome 3 short arm genome sequences. Genome Biology and Evolution, 5 5: 1038-1048. doi:10.1093/gbe/evt071

Jacquemin, Julie, Bhatia, Dharminder, Singh, Kuldeep and Wing, Rod A. (2013) The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question. Current Opinion in Plant Biology, 16 2: 147-156. doi:10.1016/j.pbi.2013.02.014

Maron, Lyza G., Guimarães, Claudia T., Kirst, Matias, Albert, Patrice S., Birchler, James A., Bradbury, Peter J., Buckler, Edward S., Coluccio, Alison E., Danilova, Tatiana V., Kudrna, David, Magalhaes, Jurandir V., Piñeros, Miguel A., Schatz, Michael C., Wing, Rod A. and Kochian, Leon V. (2013) Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proceedings of the National Academy of Sciences of the United States of America, 110 13: 5241-5246. doi:10.1073/pnas.1220766110

Yang, Ruolin, Jarvis, David E., Chen, Hao, Beilstein, Mark A., Grimwood, Jane, Jenkins, Jerry, Shu, ShengQiang, Prochnik, Simon, Xin, Mingming, Ma, Chuang, Schmutz, Jeremy, Wing, Rod A., Mitchell-Olds, Thomas, Schumaker, Karen S. and Wang, Xiangfeng (2013) The reference genome of the halophytic plant Eutrema salsugineum. Frontiers in Plant Science, 4 MAR: . doi:10.3389/fpls.2013.00046

Chen, Jinfeng, Huang, Quanfei, Gao, Dongying, Wang, Junyi, Lang, Yongshan, Liu, Tieyan, Li, Bo, Bai, Zetao, Luis Goicoechea, Jose, Liang, Chengzhi, Chen, Chengbin, Zhang, Wenli, Sun, Shouhong, Liao, Yi, Zhang, Xuemei, Yang, Lu, Song, Chengli, Wang, Meijiao, Shi, Jinfeng, Liu, Geng, Liu, Junjie, Zhou, Heling, Zhou, Weili, Yu, Qiulin, An, Na, Chen, Yan, Cai, Qingle, Wang, Bo, Liu, Binghang, Min, Jiumeng, Huang, Ying, Wu, Honglong, Li, Zhenyu, Zhang, Yong, Yin, Ye, Song, Wenqin, Jiang, Jiming, Jackson, Scott A., Wing, Rod A., Waang, Jun and Chen, Mingsheng (2013) Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications, 4 1: . doi:10.1038/ncomms2596

Koo, Hyun Jo, McDowell, Eric T., Ma, Xiaoqiang, Greer, Kevin A., Kapteyn, Jeremy, Xie, Zhengzhi, Descour, Anne, Kim, HyeRan, Yu, Yeisoo, Kudrna, David, Wing, Rod A., Soderlund, Carol A. and Gang, David R. (2013) Ginger and turmeric expressed sequence tags identify signature genes for rhizome identity and development and the biosynthesis of curcuminoids, gingerols and terpenoids. BMC Plant Biology, 13 1: . doi:10.1186/1471-2229-13-27

Ortiz, Marianyoly, Neilson, Julia W., Nelson, William M., Legatzki, Antje, Byrne, Andrea, Yu, Yeisoo, Wing, Rod A., Soderlund, Carol A., Pryor, Barry M., Pierson III, Leland S. and Maier, Raina M. (2013) Profiling Bacterial Diversity and Taxonomic Composition on Speleothem Surfaces in Kartchner Caverns, AZ. Microbial Ecology, 65 2: 371-383. doi:10.1007/s00248-012-0143-6

Mayer, Klaus F. X., Waugh, Robbie, Langridge, Peter, Close, Timothy J., Wise, Roger P., Graner, Andreas, Matsumoto, Takashi, Sato, Kazuhiro, Schulman, Alan, Ariyadasa, Ruvini, Schulte, Daniela, Poursarebani, Naser, Zhou, Ruonan, Steuernagel, Burkhard, Mascher, Martin, Scholz, Uwe, Shi, Bujun, Madishetty, Kavitha, Svensson, Jan T., Bhat, Prasanna, Moscou, Matthew, Resnik, Josh, Muehlbauer, Gary J., Hedley, Pete, Liu, Hui, Morris, Jenny, Frenkel, Zeev, Korol, Avraham, Bergès, Hélène, Taudien, Stefan, Felder, Marius, Groth, Marco, Platzer, Matthias, Himmelbach, Axel, Lonardi, Stefano, Duma, Denisa, Alpert, Matthew, Cordero, Francesa, Beccuti, Marco, Ciardo, Gianfranco, Ma, Yaqin, Wanamaker, Steve, Cattonaro, Federica, Vendramin, Vera, Scalabrin, Simone, Radovic, Slobodanka, Wing, Rod, Morgante, Michele, Nussbaumer, Thomas, Gundlach, Heidrun, Martis, Mihaela, Poland, Jesse, Pfeifer, Matthias, Moisy, Cédric, Tanskanen, Jaakko, Zuccolo, Andrea, Spannagl, Manuel, Russell, Joanne, Druka, Arnis, Marshall, David, Bayer, Micha, Swarbreck, David, Sampath, Dharanya, Ayling, Sarah, Febrer, Melanie, Caccamo, Mario, Tanaka, Tsuyoshi, Wannamaker, Steve, Schmutzer, Thomas, Brown, John W. S., Fincher, Geoffrey B. and Stein, Nils (2012) A physical, genetic and functional sequence assembly of the barley genome. Nature, 491 7426: 711-716. doi:10.1038/nature11543

Sato, Shusei, Tabata, Satoshi, Hirakawa, Hideki, Asamizu, Erika, Shirasawa, Kenta, Isobe, Sachiko, Kaneko, Takakazu, Nakamura, Yasukazu, Shibata, Daisuke, Aoki, Koh, Egholm, Michael, Knight, James, Bogden, Robert, Li, Changbao, Shuang, Yang, Xu, Xun, Pan, Shengkai, Cheng, Shifeng, Liu, Xin, Ren, Yuanyuan, Wang, Jun, Albiero, Alessandro, Dal Pero, Francesca, Todesco, Sara, Van Eck, Joyce, Buels, Robert M., Bombarely, Aureliano, Gosselin, Joseph R., Huang, Minyun, Leto, Jonathan A., Menda, Naama, Strickler, Susan, Mao, Linyong, Gao, Shan, Tecle, Isaak Y., York, Thomas, Zheng, Yi, Vrebalov, Julia T., Lee, Jemin, Zhong, Silin, Mueller, Lukas A., Stiekema, Willem J., Ribeca, Paolo, Alioto, Tyler, Yang, Wencai, Huang, Sanwen, Du, Yongchen, Zhang, Zhonghua, Gao, Jianchang, Guo, Yanmei, Wang, Xiaoxuan, Li, Ying, He, Jun, Li, Chuanyou, Cheng, Zhukuan, Zuo, Jianru, Ren, Jianfeng, Zhao, Jiuhai, Yan, Liuhua, Jiang, Hongling, Wang, Bao, Li, Hongshuang, Li, Zhenjun, Fu, Fuyou, Chen, Bingtang, Han, Bin, Feng, Qi, Fan, Danlin, Wang, Ying, Ling, Hongqing, Xue, Yongbiao, Ware, Doreen, Richard McCombie, W., Lippman, Zachary B., Chia, Jer-Ming, Jiang, Ke, Pasternak, Shiran, Gelley, Laura, Kramer, Melissa, Anderson, Lorinda K., Chang, Song-Bin, Royer, Suzanne M., Shearer, Lindsay A., Stack, Stephen M., Rose, Jocelyn K. C., Xu, Yimin, Eannetta, Nancy, Matas, Antonio J., McQuinn, Ryan, Tanksley, Steven D., Camara, Francisco, Guigó, Roderic, Rombauts, Stephane, Fawcett, Jeffrey, Van De Peer, Yves, Zamir, Dani, Liang, Chunbo, Spannagl, Manuel, Gundlach, Heidrun, Bruggmann, Remy, Mayer, Klaus, Jia, Zhiqi, Zhang, Junhong, Ye, Zhibiao, Bishop, Gerard J., Butcher, Sarah, Lopez-Cobollo, Rosa, Buchan, Daniel, Filippis, Ioannis, Abbott, James, Dixit, Institute Rekha, Singh, Manju, Singh, Archana, Pal, Jitendra Kumar, Pandit, Awadhesh, Singh, Pradeep Kumar, Mahato, Ajay Kumar, Dogra, Vivek, Gaikwad, Kishor, Sharma, Tilak Raj, Mohapatra, Trilochan, Singh, Nagendra Kumar, Causse, Mathilde, Rothan, Christophe, Noirot, Celine, Bellec, Arnaud, Klopp, Christophe, Delalande, Corinne, Berges, Helene, Mariette, Jerome, Frasse, Pierre, Vautrin, Sonia, Zouine, Toulouse Mohamed, Latché, Alain, Rousseau, Christine, Regad, Farid, Pech, Jean-Claude, Philippot, Murielle, Bouzayen, Mondher, Pericard, Pierre, Osorio, Sonia, Del Carmen, Asuncion Fernandez, Monforte, Antonio, Granell, Antonio, Fernandez-Muñoz, Rafael, Conte, Mariana, Lichtenstein, Gabriel, Carrari, Fernando, De Bellis, Gianluca, Fuligni, Fabio, Peano, Clelia, Grandillo, Silvana, Termolino, Pasquale, Pietrella, Marco, Fantini, Elio, Falcone, Giulia, Fiore, Alessia, Giuliano, Giovanni, Lopez, Loredana, Facella, Paolo, Perrotta, Gaetano, Daddiego, Loretta, Bryan, Glenn, Orozco, Biology Modesto, Pastor, Xavier, Torrents, David, Van Schriek, Marco G. M., Feron, Richard M. C., Van Oeveren, Jan, De Heer, Peter, Da Ponte, Lorena, Jacobs-Oomen, Saskia, Cariaso, Mike, Prins, Marcel, Van Eijk, Michiel J. T., Janssen, Antoine, Van Haaren, J. J., -HwanJo, Sung, Kim, Jungeun, Kwon, Suk-Yoon, Kim, Sangmi, Koo, Dal-Hoe, Lee, Sanghyeob, Clouser, Christopher, Rico, Alain, Hallab, Asis, Gebhardt, Christiane, Klee, Kathrin, Jöcker, Anika, Warfsmann, Jens, Göbel, Ulrike, Kawamura, Shingo, Yano, Entaro, Sherman, Jamie D., Fukuoka, Hiroyuki, Negoro, Satomi, Bhutty, Sarita, Chowdhury, Parul, Chattopadhyay, Debasis, Datema, Erwin, Smit, Sandra, Schijlen, Elio G.W.M., Van De Belt, Jose, Van Haarst, Jan C., Peters, Sander A., Van Staveren, Marjo J., Henkens, Marleen H. C., Mooyman, Paul J. W., Hesselink, Thamara, Van Ham, Roeland C. H. J., Jiang, Guoyong, Droege, Marcus, Choi, Doil, Kang, Byung-Cheol, Kim, Byung Dong, Park, Minkyu, Kim, Seungill, Yeom, Seon-In, Lee, Yong-Hwan, Choi, Yang-Do, Li, Guangcun, Gao, Jianwei, Liu, Yongsheng, Huang, Shengxiong, Fernandez-Pedrosa, Victoria, Collado, Carmen, Zuñ Iga, Sheila, Wang, Guoping, Cade, Rebecca, Dietrich, Robert A., Rogers, Jane, Knapp, Sandra, Fei, Zhangjun, White, Ruth A., Thannhauser, Theodore W., Giovannoni, James J., Botella, Miguel Angel, Gilbert, Louise, Gonzalez, Fabra Ramon, Goicoechea, Jose Luis, Yu, Yeisoo, Kudrna, David, Collura, Kristi, Wissotski, Marina, Wing, Rod, Meyers, Blake C., Gurazada, Aishwarya Bala, Green, Pamela J., Mathur, Saloni, Vyas, Shailendra, Solanke, Amolkumar U., Kumar, Rahul, Gupta, Vikrant, Sharma, Arun K., Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh K., Dalmay, Tamas, Mohorianu, Irina, Walts, Brandon, Chamala, Srikar, Barbazuk, W. Brad, Li, Jingping, Guo, Hui, Lee, Tae-Ho, Wang, Yupeng, Zhang, Dong, Paterson, Andrew H., Wang, Xiyin, Tang, Haibao, Barone, Amalia, Chiusano, Maria Luisa, Ercolano, Maria Raffaella, D'Agostino, Nunzio, Di Filippo, Miriam, Traini, Alessandra, Sanseverino, Walter, Frusciante, Luigi, Seymour, Graham B., Elharam, Mounir, Fu, Ying, Hua, Axin, Kenton, Steven, Lewis, Jennifer, Lin, Shaoping, Najar, Fares, Lai, Hongshing, Qin, Baifang, Shi, Ruihua, Qu, Chunmei, White, Douglas, White, James, Xing, Yanbo, Yang, Keqin, Yi, Jing, Yao, Ziyun, Zhou, Liping, Roe, Bruce A., Vezzi, Alessandro, D'Angelo, Michela, Zimbello, Rosanna, Schiavon, Riccardo, Caniato, Elisa, Rigobello, Chiara, Campagna, Davide, Vitulo, Nicola, Valle, Giorgio, Nelson, David R., De Paoli, Emanuele, Szinay, Dora, De Jong, Hans H., Bai, Yuling, Visser, Richard G. F., Lankhorst, Reném Klein, Beasley, Helen, McLaren, Karen, Nicholson, Christine, Riddle, Claire, Gianese, Giulio and The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485 7400: 635-641. doi:10.1038/nature11119

Figueira, Thais Rezende E Silva, Okura, Vagner, Rodrigues Da Silva, Felipe, Jose Da Silva, Marcio, Kudrna, Dave, Ammiraju, Jetty S.S., Talag, Jayson, Wing, Rod and Arruda, Paulo (2012) A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome. BMC Research Notes, 5 . doi:10.1186/1756-0500-5-185

Ha, Jungmin, Abernathy, Brian, Nelson, William, Grant, David, Wu, Xiaolei, Nguyen, Henry T., Stacey, Gary, Yu, Yeisoo, Wing, Rod A., Shoemaker, Randy C. and Jackson, Scott A. (2012) Integration of the draft sequence and physical map as a framework for genomic research in soybean (Glycine max (l.) merr.) and wild soybean (Glycine soja Sieb. and Zucc.). G3: Genes, Genomes, Genetics, 2 3: 321-329. doi:10.1534/g3.111.001834

Lin, Haiyan, Xia, Peng, Wing, Rod A., Zhang, Qifa and Luo, Meizhong (2012) Dynamic intra-japonica subspecies variation and resource application. Molecular Plant, 5 1: 218-230. doi:10.1093/mp/ssr085

Li, Hong-Jing, Li, Xiang-Hua, Xiao, Jing-Hua, Wing, Rod A. and Wang, Shi-Ping (2012) Ortholog alleles at Xa3/Xa26 locus confer conserved race-specific resistance against xanthomonas oryzae in rice. Molecular Plant, 5 1: 281-290. doi:10.1093/mp/ssr079

Jacquemin, J., Chaparro, C., Laudié, M., Berger, A., Gavory, F., Goicoechea, J. L., Wing, R. A. and Cooke, R. (2011) Long-range and targeted ectopic recombination between the two homeologous chromosomes 11 and 12 in Oryza species. Molecular Biology and Evolution, 28 11: 3139-3150. doi:10.1093/molbev/msr144

Fan, Chuanzhu, Walling, Jason G., Zhang, Jianwei, Hirsch, Cory D., Jiang, Jiming and Wing, Rod A. (2011) Conservation and purifying selection of transcribed genes located in a rice centromere. Plant Cell, 23 8: 2821-2830. doi:10.1105/tpc.111.085605

Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Sanyal, Abhijit, Kim, Hyeran, Collura, Kristi, Brar, Darshan S., Jackson, Scott, Wing, Rod A. and Panaud, Olivier (2011) Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice (Genome Research (2006) 16, (1262-1269)). Genome Research, 21 7: .

Song, Xiang, Goicoechea, Jose Luis, Ammiraju, Jetty S. S., Luo, Meizhong, He, Ruifeng, Lin, Jinke, Lee, So-Jeong, Sisneros, Nicholas, Watts, Tom, Kudrna, David A., Golser, Wolfgang, Ashley, Elizabeth, Collura, Kristi, Braidotti, Michele, Yu, Yeisoo, Matzkin, Luciano M., McAllister, Bryant F., Markow, Therese Ann and Wing, Rod A. (2011) The 19 genomes of Drosophila: a BAC library resource for genus-wide and genome-scale comparative evolutionary research. Genetics, 187 4: 1023-1030. doi:10.1534/genetics.111.126540

Blair, Matthew W., Hurtado, Natalia, Chavarro, Carolina M., Muñoz-Torres, Monica C., Giraldo, Martha C., Pedraza, Fabio, Tomkins, Jeff and Wing, Rod (2011) Gene-based SSR markers for common bean (Phaseolus vulgaris L.) derived from root and leaf tissue ESTs: an integration of the BMc series. BMC Plant Biology, 11 . doi:10.1186/1471-2229-11-50

Tian, Zhixi, Yu, Yanjun, Lin, Feng, Yu, Yeisoo, SanMiguel, Phillip J., Wing, Rod A., McCouch, Susan R., Ma, Jianxin and Jackson, Scott A. (2011) Exceptional lability of a genomic complex in rice and its close relatives revealed by interspecific and intraspecific comparison and population analysis. BMC Genomics, 12 . doi:10.1186/1471-2164-12-142

Wing, Rod A., Lin, Jinke and Kudrna, Dave (2011) Construction, characterization, and preliminary BAC-end sequence analysis of a bacterial artificial chromosome library of the tea plant (Camellia sinensis). Journal of Biomedicine and Biotechnology, 2011 . doi:10.1155/2011/476723

Paiva, Jorge A. P., Prat, Elisa, Vautrin, Sonia, Santos, Mauro D., San-Clemente, Hélène, Brommonschenkel, Sérgio, Fonseca, Paulo G. S., Grattapaglia, Dario, Song, Xiang, Ammiraju, Jetty S. S., Kudrna, David, Wing, Rod A., Freitas, Ana T., Bergès, Hélène and Grima-Pettenati, Jacqueline (2011) Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries. BMC Genomics, 12 . doi:10.1186/1471-2164-12-137

Argout, Xavier, Salse, Jerome, Aury, Jean-Marc, Guiltinan, Mark J., Droc, Gaetan, Gouzy, Jerome, Allegre, Mathilde, Chaparro, Cristian, Legavre, Thierry, Maximova, Siela N., Abrouk, Michael, Murat, Florent, Fouet, Olivier, Poulain, Julie, Ruiz, Manuel, Roguet, Yolande, Rodier-Goud, Maguy, Barbosa-Neto, Jose Fernandes, Sabot, Francois, Kudrna, Dave, Ammiraju, Jetty Siva S., Schuster, Stephan C., Carlson, John E., Sallet, Erika, Schiex, Thomas, Dievart, Anne, Kramer, Melissa, Gelley, Laura, Shi, Zi, Bérard, Aurélie, Viot, Christopher, Boccara, Michel, Risterucci, Ange Marie, Guignon, Valentin, Sabau, Xavier, Axtell, Michael J., Ma, Zhaorong, Zhang, Yufan, Brown, Spencer, Bourge, Mickael, Golser, Wolfgang, Song, Xiang, Clement, Didier, Rivallan, Ronan, Tahi, Mathias, Akaza, Joseph Moroh, Pitollat, Bertrand, Gramacho, Karina, D'Hont, Anglique, Brunel, Dominique, Infante, Diogenes, Kebe, Ismael, Costet, Pierre, Wing, Rod, McCombie, W Richard, Guiderdoni, Emmanuel, Quetier, Francis, Panaud, Olivier, Wincker, Patrick, Bocs, Stephanie and Lanaud, Claire (2011) The genome of Theobroma cacao. Nature Genetics, 43 2: 101-108. doi:10.1038/ng.736

Henry, Robert J., Rice, Nicole, Waters, Daniel L. E., Kasem, Shabana, Ishikawa, Ryuji, Hao, Yin, Dillon, Sally, Crayn, Darren, Wing, Rod and Vaughan, Duncan (2010) Australian Oryza: utility and conservation. Rice, 3 4: 235-241. doi:10.1007/s12284-009-9034-y

Ammiraju, Jetty S.S., Song, Xiang, Luo, Meizhong, Sisneros, Nicholas, Angelova, Angelina, Kudrna, David, Kim, Hyeran, Yu, Yeisoo, Goicoechea, Jose Luis, Lorieux, Mathias, Kurata, Nori, Brar, Darshan, Ware, Doreen, Jackson, Scott and Wing, Rod A. (2010) The Oryza BAC resource: A genus-wide and genome scale tool for exploring rice genome evolution and leveraging useful genetic diversity from wild relatives. Breeding Science, 60 5: 536-543. doi:10.1270/jsbbs.60.536

Zuccolo, Andrea, Sebastian, Aswathy, Yu, Yeisoo, Jackson, Scott, Rounsley, Steve, Billheimer, Dean and Wing, Rod A. (2010) Assessing the extent of substitution rate variation of retrotransposon Long Terminal Repeat sequences in Oryza sativa and Oryza glaberrima. Rice, 3 4: 242-250. doi:10.1007/s12284-010-9046-7

Gill, Navdeep, SanMiguel, Phillip, Dhillon, Braham Deep Singh, Abernathy, Brian, Kim, HyeRan, Stein, Lincoln, Ware, Doreen, Wing, Rod and Jackson, Scott A. (2010) Dynamic Oryza genomes: repetitive DNA sequences as genome modeling agents. Rice, 3 4: 251-269. doi:10.1007/s12284-010-9054-7

Febrer, Melanie, Goicoechea, Jose Luis, Wright, Jonathan, McKenzie, Neil, Song, Xiang, Lin, Jinke, Collura, Kristi, Wissotski, Marina, Yu, Yeisoo, Ammiraju, Jetty S. S., Wolny, Elzbieta, Idziak, Dominika, Betekhtin, Alexander, Kudrna, Dave, Hasterok, Robert, Wing, Rod A. and Bevan, Michael W. (2010) An integrated physical, genetic and cytogenetic map of Brachypodium distachyon, a model system for grass research. PLoS ONE, 5 10: e13461. doi:10.1371/journal.pone.0013461

Sanyal, Abhijit, Ammiraju, Jetty S.S., Lu, Fei, Yu, Yeisoo, Rambo, Teri, Currie, Jennifer, Kollura, Kristi, Kim, Hye-Ran, Chen, Jinfeng, Ma, Jianxin, San Miguel, Phillip, Mingsheng, Chen, Wing, Rod A. and Jackson, Scott A. (2010) Orthologous comparisons of the Hd1 region across genera reveal hd1 gene lability within diploid oryza species and disruptions to microsynteny in sorghum. Molecular Biology and Evolution, 27 11: 2487-2506. doi:10.1093/molbev/msq133

Geraldes, Armando, Rambo, Teri, Wing, Rod A., Ferrand, Nuno and Nachman, Michael W. (2010) Extensive gene conversion drives the concerted evolution of paralogous copies of the SRY gene in European rabbits. Molecular Biology and Evolution, 27 11: 2437-2440. doi:10.1093/molbev/msq139

Ammiraju, Jetty S. S., Fan, Chuanzhu, Yu, Yeisoo, Song, Xiang, Cranston, Karen A., Pontaroli, Ana Clara, Lu, Fei, Sanyal, Abhijit, Jiang, Ning, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Talag, Jayson, Bennetzen, Jeffrey L., Chen, Mingsheng, Jackson, Scott and Wing, Rod A. (2010) Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza. Plant Journal, 63 3: 430-442. doi:10.1111/j.1365-313X.2010.04251.x

Schmutz, Jeremy, Cannon, Steven B., Schlueter, Jessica, Ma, Jianxin, Mitros, Therese, Nelson, William, Hyten, David L., Song, Qijian, Thelen, Jay J., Cheng, Jianlin, Xu, Dong, Hellsten, Uffe, May, Gregory D., Yu, Yeisoo, Sakurai, Tetsuya, Umezawa, Taishi, Bhattacharyya, Madan K., Sandhu, Devinder, Valliyodan, Babu, Lindquist, Erika, Peto, Myron, Grant, David, Shu, Shengqiang, Goodstein, David, Barry, Kerrie, Futrell-Griggs, Montona, Abernathy, Brian, Du, Jianchang, Tian, Zhixi, Zhu, Liucun, Gill, Navdeep, Joshi, Trupti, Libault, Marc, Sethuraman, Anand, Zhang, Xue-Cheng, Shinozaki, Kazuo, Nguyen, Henry T., Wing, Rod A., Cregan, Perry, Specht, James, Grimwood, Jane, Rokhsar, Dan, Stacey, Gary, Shoemaker, Randy C. and Jackson, Scott A. (2010) Erratum: Genome sequence of the palaeopolyploid soybean (Nature (2010) 463 (178-183)). Nature, 465 7294: . doi:10.1038/nature08957

Schmutz, Jeremy, Cannon, Steven B., Schlueter, Jessica, Ma, Jianxin, Mitros, Therese, Nelson, William, Hyten, David L., Song, Qijian, Thelen, Jay J., Cheng, Jianlin, Xu, Dong, Hellsten, Uffe, May, Gregory D., Yu, Yeisoo, Sakurai, Tetsuya, Umezawa, Taishi, Bhattacharyya, Madan K., Sandhu, Devinder, Valliyodan, Babu, Lindquist, Erika, Peto, Myron, Grant, David, Shu, Shengqiang, Goodstein, David, Barry, Kerrie, Futrell-Griggs, Montona, Abernathy, Brian, Du, Jianchang, Tian, Zhixi, Zhu, Liucun, Gill, Navdeep, Joshi, Trupti, Libault, Marc, Sethuraman, Anand, Zhang, Xue-Cheng, Shinozaki, Kazuo, Nguyen, Henry T., Wing, Rod A., Cregan, Perry, Specht, James, Grimwood, Jane, Rokhsar, Dan, Stacey, Gary, Shoemaker, Randy C. and Jackson, Scott A. (2010) Genome sequence of the palaeopolyploid soybean. Nature, 463 7278: 178-183. doi:10.1038/nature08670

Gao, Dongying, Gill, Navdeep, Kim, Hye-Ran, Walling, Jason G, Zhang, Wenli, Fan, Chuanzhu, Yu, Yeisoo, Ma, Jianxin, Sanmiguel, Phillip, Jiang, Ning, Cheng, Zhukuan, Wing, Rod A., Jiang, Jiming and Jackson, Scott A. (2009) A lineage-specific centromere retrotransposon in Oryza brachyantha. Plant Journal, 60 5: 820-831. doi:10.1111/j.1365-313X.2009.04005.x

Schnable, Patrick S., Ware, Doreen, Fulton, Robert S., Stein, Joshua C., Wei, Fusheng, Pasternak, Shiran, Liang, Chengzhi, Zhang, Jianwei, Fulton, Lucinda, Graves, Tina A., Minx, Patrick, Reily, Amy Denise, Courtney, Laura, Kruchowski, Scott S., Tomlinson, Chad, Strong, Cindy, Delehaunty, Kim, Fronick, Catrina, Courtney, Bill, Rock, Susan M., Belter, Eddie, Du, Feiyu, Kim, Kyung, Abbott, Rachel M., Cotton, Marc, Levy, Andy, Marchetto, Pamela, Ochoa, Kerri, Jackson, Stephanie M., Gillam, Barbara, Chen, Weizu, Yan, Le, Higginbotham, Jamey, Cardenas, Marco, Waligorski, Jason, Applebaum, Elizabeth, Phelps, Lindsey, Falcone, Jason, Kanchi, Krishna, Thane, Thynn, Scimone, Adam, Thane, Nay, Henke, Jessica, Wang, Tom, Ruppert, Jessica, Shah, Neha, Rotter, Kelsi, Hodges, Jennifer, Ingenthron, Elizabeth, Cordes, Matt, Kohlberg, Sara, Sgro, Jennifer, Delgado, Brandon, Mead, Kelly, Chinwalla, Asif, Leonard, Shawn, Crouse, Kevin, Collura, Kristi, Kudrna, Dave, Currie, Jennifer, He, Ruifeng, Angelova, Angelina, Rajasekar, Shanmugam, Mueller, Teri, Lomeli, Rene, Scara, Gabriel, Ko, Ara, Delaney, Krista, Wissotski, Marina, Lopez, Georgina, Campos, David, Braidotti, Michele, Ashley, Elizabeth, Golser, Wolfgang, Kim, Hyeran, Lee, Seunghee, Lin, Jinke, Dujmic, Zeljko, Kim, Woojin, Talag, Jayson, Zuccolo, Andrea, Fan, Chuanzhu, Sebastian, Aswathy, Kramer, Melissa, Spiegel, Lori, Nascimento, Lidia, Zutavern, Theresa, Miller, Beth, Ambroise, Claude, Muller, Stephanie, Spooner, Will, Narechania, Apurva, Ren, Liya, Wei, Sharon, Kumari, Sunita, Faga, Ben, Levy, Michael J., McMahan, Linda, Van Buren, Peter, Vaughn, Matthew W., Ying, Kai, Yeh, Cheng-Ting, Emrich, Scott J., Jia, Yi, Kalyanaraman, Ananth, Hsia, An-Ping, Barbazuk, W. Brad, Baucom, Regina S., Brutnell, Thomas P., Carpita, Nicholas C., Chaparro, Cristian, Chia, Jer-Ming, Deragon, Jean-Marc, Estill, James C., Fu, Yan, Jeddeloh, Jeffrey A., Han, Yujun, Lee, Hyeran, Li, Pinghua, Lisch, Damon R., Liu, Sanzhen, Liu, Zhijie, Nagel, Dawn Holligan, McCann, Maureen C., Sanmiguel, Phillip, Myers, Alan M., Nettleton, Dan, Nguyen, John, Penning, Bryan W., Ponnala, Lalit, Schneider, Kevin L., Schwartz, David C., Sharma, Anupma, Soderlund, Carol, Springer, Nathan M., Sun, Qi, Wang, Hao, Waterman, Michael, Westerman, Richard, Wolfgruber, Thomas K., Yang, Lixing, Yu, Yeisoo, Zhang, Lifang, Zhou, Shiguo, Zhu, Qihui, Bennetzen, Jeffrey L., Dawe, R. Kelly, Jiang, Jiming, Jiang, Ning, Presting, Gernot G., Wessler, Susan R., Aluru, Srinivas, Martienssen, Robert A., Clifton, Sandra W., McCombie, W. Richard, Wing, Rod A. and Wilson, Richard K. (2009) The B73 maize genome: Complexity, diversity, and dynamics. Science, 326 5956: 1112-1115. doi:10.1126/science.1178534

Wei, Fusheng, Stein, Joshua C., Liang, Chengzhi, Zhang, Jianwei, Fulton, Robert S., Baucom, Regina S., De Paoli, Emanuele, Zhou, Shiguo, Yang, Lixing, Han, Yujun, Pasternak, Shiran, Narechania, Apurva, Zhang, Lifang, Yeh, Cheng-Ting, Ying, Kai, Nagel, Dawn H., Collura, Kristi, Kudrna, David, Currie, Jennifer, Lin, Jinke, Kim, HyeRan, Angelova, Angelina, Scara, Gabriel, Wissotski, Marina, Golser, Wolfgang, Courtney, Laura, Kruchowski, Scott, Graves, Tina A., Rock, Susan M., Adams, Stephanie, Fulton, Lucinda A., Fronick, Catrina, Courtney, William, Kramer, Melissa, Spiegel, Lori, Nascimento, Lydia, Kalyanaraman, Ananth, Chaparro, Cristian, Deragon, Jean-Marc, Miguel, Phillip San, Jiang, Ning, Wessler, Susan R., Green, Pamela J., Yu, Yeisoo, Schwartz, David C., Meyers, Blake C., Bennetzen, Jeffrey L., Martienssen, Robert A., McCombie, W. Richard, Aluru, Srinivas, Clifton, Sandra W., Schnable, Patrick S., Ware, Doreen, Wilson, Richard K. and Wing, Rod A. (2009) Detailed analysis of a contiguous 22-Mb region of the maize genome. PLoS Genetics, 5 11: e1000728. doi:10.1371/journal.pgen.1000728

Wei, Fusheng, Zhang, Jianwei, Zhou, Shiguo, He, Ruifeng, Schaeffer, Mary, Collura, Kristi, Kudrna, David, Faga, Ben P., Wissotski, Marina, Golser, Wolfgang, Rock, Susan M., Graves, Tina A., Fulton, Robert S., Coe, Ed, Schnable, Patrick S., Schwartz, David C., Ware, Doreen, Clifton, Sandra W., Wilson, Richard K. and Wing, Rod A. (2009) The physical and genetic framework of the maize B73 genome. PLoS Genetics, 5 11: e1000715. doi:10.1371/journal.pgen.1000715

Zhou, Shiguo, Wei, Fusheng, Nguyen, John, Bechner, Mike, Potamousis, Konstantinos, Goldstein, Steve, Pape, Louise, Mehan, Michael R., Churas, Chris, Pasternak, Shiran, Forrest, Dan K., Wise, Roger, Ware, Doreen, Wing, Rod A., Waterman, Michael S., Livny, Miron and Schwartz, David C. (2009) A single molecule scaffold for the maize genome. PLoS Genetics, 5 11: e1000711. doi:10.1371/journal.pgen.1000711

Cranston, Karen A., Hurwitz, Bonnie, Ware, Doreen, Stein, Lincoln and Wing, Rod A. (2009) Species trees from highly incongruent gene trees in rice. Systematic Biology, 58 5: 489-500. doi:10.1093/sysbio/syp054

Nah, Gyoungju, Pagliarulo, Christopher L., Mohr, Peter G., Luo, Meizhong, Sisneros, Nick, Yu, Yeisoo, Collura, Kristi, Currie, Jennifer, Goicoechea, Jose Luis, Wing, Rod A. and Schumaker, Karen S. (2009) Comparative sequence analysis of the SALT OVERLY SENSITIVE1 orthologous region in Thellungiella halophila and Arabidopsis thaliana. Genomics, 94 3: 196-203. doi:10.1016/j.ygeno.2009.05.007

Degnan, Patrick H., Yu, Yeisoo, Sisneros, Nicholas, Wing, Rod A. and Moran, Nancy A. (2009) Hamiltonella defensa, genome evolution of protective bacterial endosymbiont from pathogenic ancestors. Proceedings of the National Academy of Sciences of the United States of America, 106 22: 9063-9068. doi:10.1073/pnas.0900194106

Rounsley, Steve, Marri, Pradeep Reddy, Yu, Yeisoo, He, Ruifeng, Sisneros, Nick, Goicoechea, Jose Luis, Lee, So Jeong, Angelova, Angelina, Kudrna, Dave, Luo, Meizhong, Affourtit, Jason, Desany, Brian, Knight, James, Niazi, Faheem, Egholm, Michael and Wing, Rod A. (2009) De novo next generation sequencing of plant genomes. Rice, 2 1: 35-43. doi:10.1007/s12284-009-9025-z

Lu, Fei, Ammiraju, Jetty S. S., Sanyal, Abhijit, Zhang, Shengli, Son, Rentao, Chen, Jinfeng, Li, Guisheng, Sui, Yi, Song, Xiang, Cheng, Zhukuan, De Oliveira, Antonio Costa, Bennetzen, Jeffrey L., Jackson, Scott A., Wing, Rod A. and Chena, Mingsheng (2009) Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes. Proceedings of the National Academy of Sciences of the United States of America, 106 6: 2071-2076. doi:10.1073/pnas.0812798106

Nelson, William, Luo, Meizhong, Ma, Jianxin, Estep, Matt, Estill, James, He, Ruifeng, Talag, Jayson, Sisneros, Nicholas, Kudrna, David, Kim, HyeRan, Ammiraju, Jetty S.S., Collura, Kristi, Bharti, Arvind K., Messing, Joachim, Wing, Rod A., SanMiguel, Phillip, Bennetzen, Jeffrey L. and Soderlund, Carol (2008) Methylation-sensitive linking libraries enhance gene-enriched sequencing of complex genomes and map DNA methylation domains. BMC Genomics, 9 . doi:10.1186/1471-2164-9-621

Ammiraju, Jetty S. S., Lu, Fei, Sanyal, Abhijit, Yu, Yeisoo, Song, Xiang, Jiang, Ning, Pontaroli, Ana Clara, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Talag, Jayson, Fan, Chuanzhu, Goicoechea, Jose Luis, Zuccolo, Andrea, Chen, Jinfeng, Bennetzen, Jeffrey L., Chen, Mingsheng, Jackson, Scott and Wing, Rod A. (2008) Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set. Plant Cell, 20 12: 3191-3209. doi:10.1105/tpc.108.063727

Fan, Chuanzhu, Zhang, Yong, Yu, Yeisoo, Rounsley, Steve, Long, Manyuan and Wing, Rod A. (2008) The subtelomere of Oryza sativa chromosome 3 short arm as a hot bed of new gene origination in rice. Molecular Plant, 1 5: 839-850. doi:10.1093/mp/ssn050

Le Cunff, Loïc, Garsmeur, Olivier, Raboin, Louis Marie, Pauquet, Jérome, Telismart, Hugues, Selvi, Athiappan, Grivet, Laurent, Philippe, Romain, Begum, Dilara, Deu, Monique, Costet, Laurent, Wing, Rod, Glaszmann, Jean Christophe and D'Hont, Angélique (2008) Diploid/polyploid syntenic shuttle mapping and haplotype-specific chromosome walking toward a rust resistance gene (Bru1) in highly polyploid sugarcane (2n ∼ 12x ∼ 115). Genetics, 180 1: 649-660. doi:10.1534/genetics.108.091355

Zuccolo, Andrea, Ammiraju, Jetty S. S., Kim, HyeRan, Sanyal, Abhijit, Jackson, Scott and Wing, Rod A. (2008) Rapid and differential proliferation of the Ty3-Gypsy LTR retrotransposon Atlantys in the genus Oryza. Rice, 1 1: 85-99. doi:10.1007/s12284-008-9002-y

Wei, Fusheng and Wing, Rod A. (2008) A fruitful outcome to the papaya genome project. Genome Biology, 9 6: . doi:10.1186/gb-2008-9-6-227

Soltis, Douglas E., Albert, Victor A., Leebens-Mack, Jim, Palmer, Jeffrey D., Wing, Rod A., dePamphilis, Claude W., Ma, Hong, Carlson, John E., Altman, Naomi, Kim, Sangtae, Kerr, P. Kerr, Zuccolo, Andrea and Soltis, Pamela S. (2008) The Amborella genome: An evolutionary reference for plant biology. Genome Biology, 9 3: . doi:10.1186/gb-2008-9-3-402

Kim, HyeRan, Hurwitz, Bonnie, Yu, Yeisoo, Collura, Kristi, Gill, Navdeep, SanMiguel, Phillip, Mullikin, James C., Maher, Christopher, Nelson, William, Wissotski, Marina, Braidotti, Michele, Kudrna, David, Goicoechea, José Luis, Stein, Lincoln, Ware, Doreen, Jackson, Scott A., Soderlund, Carol and Wing, Rod A. (2008) Construction, alignment and analysis of twelve framework physical maps that represent the ten genome types of the genus Oryza. Genome Biology, 9 2: . doi:10.1186/gb-2008-9-2-r45

Qu, Shaohong, Desai, Aparna, Wing, Rod and Sundaresan, Venkatesan (2008) A versatile transposon-based activation tag vector system for functional genomics in cereals and other monocot plants. Plant Physiology, 146 1: 189-199. doi:10.1104/pp.107.111427

Clark, Andrew G., Eisen, Michael B., Smith, Douglas R., Bergman, Casey M., Oliver, Brian, Markow, Therese A., Kaufman, Thomas C., Kellis, Manolis, Gelbart, William, Iyer, Venky N., Pollard, Daniel A., Sackton, Timothy B., Larracuente, Amanda M., Singh, Nadia D., Abad, Jose P., Abt, Dawn N., Adryan, Boris, Aguade, Montserrat, Akashi, Hiroshi, Anderson, Wyatt W., Aquadro, Charles F., Ardell, David H., Arguello, Roman, Artieri, Carlo G., Barbash, Daniel A., Barker, Daniel, Barsanti, Paolo, Batterham, Phil, Batzoglou, Serafim, Begun, Dave, Bhutkar, Arjun, Blanco, Enrico, Bosak, Stephanie A., Bradley, Robert K., Brand, Adrianne D., Brent, Michael R., Brooks, Angela N., Brown, Randall H., Butlin, Roger K., Caggese, Corrado, Calvi, Brian R., Bernardo De Carvalho, A., Caspi, Anat, Castrezana, Sergio, Celniker, Susan E., Chang, Jean L., Chapple, Charles, Chatterji, Sourav, Chinwalla, Asif, Civetta, Alberto, Clifton, Sandra W., Comeron, Josep M., Costello, James C., Coyne, Jerry A., Daub, Jennifer, David, Robert G., Delcher, Arthur L., Delehaunty, Kim, Do, Chuong B., Ebling, Heather, Edwards, Kevin, Eickbush, Thomas, Evans, Jay D., Filipski, Alan, Findeiß, Sven, Freyhult, Eva, Fulton, Lucinda, Fulton, Robert, Garcia, Ana C. L., Gardiner, Anastasia, Garfield, David A., Garvin, Barry E., Gibson, Greg, Gilbert, Don, Gnerre, Sante, Godfrey, Jennifer, Good, Robert, Gotea, Valer, Gravely, Brenton, Greenberg, Anthony J., Griffiths-Jones, Sam, Gross, Samuel, Guigo, Roderic, Gustafson, Erik A., Haerty, Wilfried, Hahn, Matthew W., Halligan, Daniel L., Halpern, Aaron L., Halter, Gillian M., Han, Mira V., Heger, Andreas, Hillier, LaDeana, Hinrichs, Angie S., Holmes, Ian, Hoskins, Roger A., Hubisz, Melissa J., Hultmark, Dan, Huntley, Melanie A., Jaffe, David B., Jagadeeshan, Santosh, Jeck, William R., Johnson, Justin, Jones, Corbin D., Jordan, William C., Karpen, Gary H., Kataoka, Eiko, Keightley, Peter D., Kheradpour, Pouya, Kirkness, Ewen F., Koerich, Leonardo B., Kristiansen, Karsten, Kudrna, Dave, Kulathinal, Rob J., Kumar, Sudhir, Kwok, Roberta, Lander, Eric, Langley, Charles H., Lapoint, Richard, Lazzaro, Brian P., Lee, So-Jeong, Levesque, Lisa, Li, Ruiqiang, Lin, Chiao-Feng, Lin, Michael F., Lindblad-Toh, Kerstin, Llopart, Ana, Long, Manyuan, Low, Lloyd, Lozovsky, Elena, Lu, Jian, Luo, Meizhong, Machado, Carlos A., Makalowski, Wojciech, Marzo, Mar, Matsuda, Muneo, Matzkin, Luciano, McAllister, Bryant, McBride, Carolyn S., McKernan, Brendan, McKernan, Kevin, Mendez-Lago, Maria, Minx, Patrick, Mollenhauer, Michael U., Montooth, Kristi, Mount, Stephen M., Mu, Xu, Myers, Eugene, Negre, Barbara, Newfeld, Stuart, Nielsen, Rasmus, Noor, Mohamed A. F., O'Grady, Patrick, Pachter, Lior, Papaceit, Montserrat, Parisi, Matthew J., Parisi, Michael, Parts, Leopold, Pedersen, Jakob S., Pesole, Graziano, Phillippy, Adam M., Ponting, Chris P., Pop, Mihai, Porcelli, Damiano, Powell, Jeffrey R., Prohaska, Sonja, Pruitt, Kim, Puig, Marta, Quesneville, Hadi, Ravi Ram, Kristipati, Rand, David, Rasmussen, Matthew D., Reed, Laura K., Reenan, Robert, Reily, Amy, Remington, Karin A., Rieger, Tania T., Ritchie, Michael G., Robin, Charles, Rogers, Yu-Hui, Rohde, Claudia, Rozas, Julio, Rubenfield, Marc J., Ruiz, Alfredo, Russo, Susan, Salzberg, Steven L., Sanchez-Gracia, Alejandro, Saranga, David J., Sato, Hajime, Schaeffer, Stephen W., Schatz, Michael C., Schlenke, Todd, Schwartz, Russell, Segarra, Carmen, Singh, Rama S., Sirot, Laura, Sirota, Marina, Sisneros, Nicholas B., Smith, Chris D., Smith, Temple F., Spieth, John, Stage, Deborah E., Stark, Alexander, Stephan, Wolfgang, Strausberg, Robert L., Strempel, Sebastian, Sturgill, David, Sutton, Granger, Sutton, Granger G., Tao, Wei, Teichmann, Sarah, Tobari, Yoshiko N., Tomimura, Yoshihiko, Tsolas, Jason M., Valente, Vera L. S., Venter, Eli, Craig Venter, J., Vicario, Saverio, Vieira, Filipe G., Vilella, Albert J., Villasante, Alfredo, Walenz, Brian, Wang, Jun, Wasserman, Marvin, Watts, Thomas, Wilson, Derek, Wilson, Richard K., Wing, Rod A., Wolfner, Mariana F., Wong, Alex, Ka-Shu Wong, Gane, Wu, Chung-I, Wu, Gabriel, Yamamoto, Daisuke, Yang, Hsiao-Pei, Yang, Shiaw-Pyng, Yorke, James A., Yoshida, Kiyohito, Zdobnov, Evgeny, Zhang, Peili, Zhang, Yu, Zimin, Aleksey V., Baldwin, Jennifer, Abdouelleil, Amr, Abdulkadir, Jamal, Abebe, Adal, Abera, Brikti, Abreu, Justin, Christophe Acer, St, Aftuck, Lynne, Alexander, Allen, An, Peter, Anderson, Erica, Anderson, Scott, Arachi, Harindra, Azer, Marc, Bachantsang, Pasang, Barry, Andrew, Bayul, Tashi, Berlin, Aaron, Bessette, Daniel, Bloom, Toby, Blye, Jason, Boguslavskiy, Leonid, Bonnet, Claude, Boukhgalter, Boris, Bourzgui, Imane, Brown, Adam, Cahill, Patrick, Channer, Sheridon, Cheshatsang, Yama, Chuda, Lisa, Citroen, Mieke, Collymore, Alville, Cooke, Patrick, Costello, Maura, D'Aco, Katie, Daza, Riza, De Haan, Georgius, Degray, Stuart, Demaso, Christina, Dhargay, Norbu, Dooley, Kimberly, Dooley, Erin, Doricent, Missole, Dorje, Passang, Dorjee, Kunsang, Dupes, Alan, Elong, Richard, Falk, Jill, Farina, Abderrahim, Faro, Susan, Ferguson, Diallo, Fisher, Sheila, Foley, Chelsea D., Franke, Alicia, Friedrich, Dennis, Gadbois, Loryn, Gearin, Gary, Gearin, Christina R., Giannoukos, Georgia, Goode, Tina, Graham, Joseph, Grandbois, Edward, Grewal, Sharleen, Gyaltsen, Kunsang, Hafez, Nabil, Hagos, Birhane, Hall, Jennifer, Henson, Charlotte, Hollinger, Andrew, Honan, Tracey, Huard, Monika D., Hughes, Leanne, Hurhula, Brian, Erii Husby, M., Kamat, Asha, Kanga, Ben, Kashin, Seva, Khazanovich, Dmitry, Kisner, Peter, Lance, Krista, Lara, Marcia, Lee, William, Lennon, Niall, Letendre, Frances, Levine, Rosie, Lipovsky, Alex, Liu, Xiaohong, Liu, Jinlei, Liu, Shangtao, Lokyitsang, Tashi, Lokyitsang, Yeshi, Lubonja, Rakela, Lui, Annie, MacDonald, Pen, Magnisalis, Vasilia, Maru, Kebede, Matthews, Charles, McCusker, William, McDonough, Susan, Mehta, Teena, Meldrim, James, Meneus, Louis, Mihai, Oana, Mihalev, Atanas, Mihova, Tanya, Mittelman, Rachel, Mlenga, Valentine, Montmayeur, Anna, Mulrain, Leonidas, Navidi, Adam, Naylor, Jerome, Negash, Tamrat, Nguyen, Thu, Nguyen, Nga, Nicol, Robert, Norbu, Choe, Norbu, Nyima, Novod, Nathaniel, O'Neill, Barry, Osman, Sahal, Markiewicz, Eva, Oyono, Otero L., Patti, Christopher, Phunkhang, Pema, Pierre, Fritz, Priest, Margaret, Raghuraman, Sujaa, Rege, Filip, Reyes, Rebecca, Rise, Cecil, Rogov, Peter, Ross, Keenan, Ryan, Elizabeth, Settipalli, Sampath, Shea, Terry, Sherpa, Ngawang, Shi, Lu, Shih, Diana, Sparrow, Todd, Spaulding, Jessica, Stalker, John, Stange-Thomann, Nicole, Stavropoulos, Sharon, Stone, Catherine, Strader, Christopher, Tesfaye, Senait, Thomson, Talene, Thoulutsang, Yama, Thoulutsang, Dawa, Topham, Kerri, Topping, Ira, Tsamla, Tsamla, Vassiliev, Helen, Vo, Andy, Wangchuk, Tsering, Wangdi, Tsering, Weiand, Michael, Wilkinson, Jane, Wilson, Adam, Yadav, Shailendra, Young, Geneva, Yu, Qing, Zembek, Lisa, Zhong, Danni, Zimmer, Andrew, Zwirko, Zac, Alvarez, Pablo, Brockman, Will, Butler, Jonathan, Chin, Cheewhye, Grabherr, Manfred, Kleber, Michael, Mauceli, Evan and MacCallum, Iain (2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450 7167: 203-218. doi:10.1038/nature06341

Zuccolo, Andrea, Sebastian, Aswathy, Talag, Jayson, Yu, Yeisoo, Kim, HyeRan, Collura, Kristi, Kudrna, Dave and Wing, Rod A. (2007) Transposable element distribution, abundance and role in genome size variation in the genus Oryza. BMC Evolutionary Biology, 7 . doi:10.1186/1471-2148-7-152

Chen, Kai-Yi, Cong, Bin, Wing, Rod, Vrebalov, Julia and Tanksley, Steven D. (2007) Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes. Science, 318 5850: 643-645. doi:10.1126/science.1148428

Ma, Jianxin, Wing, Rod A., Bennetzen, Jeffrey L. and Jackson, Scott A. (2007) Evolutionary history and positional shift of a rice centromere. Genetics, 177 2: 1217-1220. doi:10.1534/genetics.107.078709

Wei, Fusheng, Coe, Ed, Nelson, William, Bharti, Arvind K., Engler, Fred, Butler, Ed, Kim, HyeRan, Goicoechea, Jose Luis, Chen, Mingsheng, Lee, Seunghee, Fuks, Galina, Sanchez-Villeda, Hector, Schroeder, Steven, Fang, Zhiwei, McMullen, Michael, Davis, Georgia, Bowers, John E., Paterson, Andrew H., Schaeffer, Mary, Gardiner, Jack, Cone, Karen, Messing, Joachim, Soderlund, Carol and Wing, Rod A. (2007) Physical and genetic structure of the maize genome reflects its complex evolutionary history. PLoS Genetics, 3 7: 1254-1263. doi:10.1371/journal.pgen.0030123

Liang, Haiying, Fang, Eric G., Tomkins, Jeffrey P., Luo, Meizhong, Kudrna, David, Kim, Hye Ran, Arumuganathan, K., Zhao, Shaying, Leebens-Mack, James, Schlarbaum, Scott E., Banks, Jo Ann, Depamphilis, Claude W., Mandoli, Dina F., Wing, Rod A. and Carlson, John E. (2007) Development of a BAC library for yellow-poplar (Liriodendron tulipifera) and the identification of genes associated with flower development and lignin biosynthesis. Tree Genetics and Genomes, 3 3: 215-225. doi:10.1007/s11295-006-0057-x

Grover, Corrinne E., Kim, Hyeran, Wing, Rod A., Paterson, Andrew H. and Wendel, Jonathan F. (2007) Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton (Gossypium). Plant Journal, 50 6: 995-1006. doi:10.1111/j.1365-313X.2007.03102.x

Kim, HyeRan, San Miguel, Phillip, Nelson, William, Collura, Kristi, Wissotski, Marina, Walling, Jason G., Jun, Pyo Kim, Jackson, Scott A., Soderlund, Carol and Wing, Rod A. (2007) Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type). Genetics, 176 1: 379-390. doi:10.1534/genetics.106.068783

Gowda, Malali, Venu, R. C., Li, Huameng, Jantasuriyarat, Chatchawan, Chen, Songbiao, Bellizzi, Maria, Pampanwar, Vishal, Kim, Hyeran, Dean, Ralph A., Stahlberg, Eric, Wing, Rod, Soderlund, Cari and Wang, Guo-Liang (2007) Magnaporthe grisea infection triggers RNA variation and antisense transcript expression in rice. Plant Physiology, 144 1: 524-533. doi:10.1104/pp.107.095653

Ma, Jianxin, Wing, Rod A., Bennetzen, Jeffrey L. and Jackson, Scott A. (2007) Plant centromere organization: a dynamic structure with conserved functions. Trends in Genetics, 23 3: 134-139. doi:10.1016/j.tig.2007.01.004

Itoh, Takeshi, Tanaka, Tsuyoshi, Barrero, Roberto A., Yamasaki, Chisato, Fujii, Yasuyuki, Hilton, Phillip B., Antonio, Baltazar A., Aono, Hideo, Apweiler, Rolf, Bruskiewich, Richard, Bureau, Thomas, Burr, Frances, De Oliveira, Antonio Costa, Fuks, Galina, Habara, Takuya, Haberer, Georg, Han, Bin, Harada, Erimi, Hiraki, Aiko T., Hirochika, Hirohiko, Hoen, Douglas, Hokari, Hiroki, Hosokawa, Satomi, Hsing, Yue-Ie, Ikawa, Hiroshi, Ikeo, Kazuho, Imanishi, Tadashi, Ito, Yukiyo, Jaiswal, Pankaj, Kanno, Masako, Kawahara, Yoshihiro, Kawamura, Toshiyuki, Kawashima, Hiroaki, Khurana, Jitendra P., Kikuchi, Shoshi, Komatsu, Setsuko, Koyanagi, Kanako O., Kubooka, Hiromi, Lieberherr, Damien, Lin, Yao-Cheng, Lonsdale, David, Matsumoto, Takashi, Matsuya, Akihiro, McCombie, W. Richard, Messing, Joachim, Miyao, Akio, Mulder, Nicola, Nagamura, Yoshiaki, Nam, Jongmin, Namiki, Nobukazu, Numa, Hisataka, Nurimoto, Shin, O'Donovan, Claire, Ohyanagi, Hajime, Okido, Toshihisa, OOta, Satoshi, Osato, Naoki, Palmer, Lance E., Quetier, Francis, Raghuvanshi, Saurabh, Saichi, Naomi, Sakai, Hiroaki, Sakai, Yasumichi, Sakata, Katsumi, Sakurai, Tetsuya, Sato, Fumihiko, Sato, Yoshiharu, Schoof, Heiko, Seki, Motoaki, Shibata, Michie, Shimizu, Yuji, Shinozaki, Kazuo, Shinso, Yuji, Singh, Nagendra K., Smith-White, Brian, Takeda, Jun-Ichi, Tanino, Motohiko, Tatusova, Tatiana, Thongjuea, Supat, Todokoro, Fusano, Tsugane, Mika, Tyagi, Akhilesh K., Vanavichit, Apichart, Wang, Aihui, Wing, Rod A., Yamaguchi, Kaori, Yamamoto, Mayu, Yamamoto, Naoyuki, Yu, Yeisoo, Zhang, Hao, Zhao, Qiang, Higo, Kenichi, Burr, Benjamin, Gojobori, Takashi and Sasaki, Takuji (2007) Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana: The Rice Annotation Project. Genome Research, 17 2: 175-183. doi:10.1101/gr.5509507

Jung, Jinwook, Won, So Youn, Suh, Seok Cheol, Kim, Hyeran, Wing, Rod, Jeong, Yeonhwa, Hwang, Ingyu and Kim, Minkyun (2007) The barley ERF-type transcription factor HvRAF confers enhanced pathogen resistance and salt tolerance in Arabidopsis. Planta, 225 3: 575-588. doi:10.1007/s00425-006-0373-2

Nelson, William M., Dvorak, Jan, Luo, Ming-Cheng, Messing, Joachim, Wing, Rod A. and Soderlund, Carol (2007) Efficacy of clone fingerprinting methodologies. Genomics, 89 1: 160-165. doi:10.1016/j.ygeno.2006.08.008

Gowda, Malali, Venu, Reddyvari-Channa, Raghupathy, Mohan B., Nobuta, Kan, Li, Huameng, Wing, Rod, Stahlberg, Eric, Couglan, Sean, Haudenschild, Christian D., Dean, Ralph, Nahm, Baek-Hie, Meyers, Blake C. and Wang, Guo-Liang (2006) Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods. BMC Genomics, 7 . doi:10.1186/1471-2164-7-310

Hawkins, Jennifer S., Kim, HyeRan, Nason, John D., Wing, Rod A. and Wendel, Jonathan F. (2006) Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Research, 16 10: 1252-1261. doi:10.1101/gr.5282906

Cunningham, Charles, Hikima, Jun-Ichi, Jenny, Matthew J., Chapman, Robert W., Fang, Guang-Chen, Saski, Chris, Lundqvist, Mats L., Wing, Rod A., Cupit, Pauline M., Gross, Paul S., Warr, Greg W. and Tomkins, Jeff P. (2006) New resources for marine genomics: Bacterial artificial chromosome libraries for the eastern and pacific oysters (Crassostrea virginica and C. gigas). Marine Biotechnology, 8 5: 521-533. doi:10.1007/s10126-006-6013-9

Soderlund, Carol, Haller, Karl, Pampanwar, Vishal, Ebbole, Daniel, Farman, Mark, Orbach, Marc J., Wang, Guo-Liang, Wing, Rod, Xu, Jin-Rong, Brown, Doug, Mitchell, Thomas and Dean, Ralph (2006) MGOS: a resource for studying Magnaporthe grisea and Oryza sativa interactions. Molecular Plant-Microbe Interactions, 19 10: 1055-1061. doi:10.1094/MPMI-19-1055

Piegu, Benoit, Guyot, Romain, Picault, Nathalie, Roulin, Anne, Saniyal, Abhijit, Kim, Hyeran, Collura, Kristi, Brar, Darshan S., Jackson, Scott, Wing, Rod A. and Panaud, Olivier (2006) Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Research, 16 10: 1262-1269. doi:10.1101/gr.5290206

Yan, Huihuang, Ito, Hidetaka, Nobuta, Kan, Ouyang, Shu, Jin, Weiwei, Tian, Shulan, Lu, Cheng, Venu, R. C., Wang, Guo-Liang, Green, Pamela J., Wing, Rod A., Buell, C. Robin, Meyers, Blake C. and Jiang, Jiming (2006) Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. Plant Cell, 18 9: 2123-2133. doi:10.1105/tpc.106.043794

Luo, Meizhong, Kim, HyeRan, Kudrna, Dave, Sisneros, Nicholas B., Lee, So-Jeong, Mueller, Christopher, Collura, Kristi, Zuccolo, Andrea, Buckingham, Bryan, Grim, Suzanne M., Yanagiya, Kazuyo, Inoko, Hidetoshi, Shiina, Takashi, Flajnik, Martin F., Wing, Rod A. and Ohta, Yuko (2006) Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey. BMC Genomics, 7 . doi:10.1186/1471-2164-7-106

Luo, Meizhong, Yu, Yeisoo, Kim, Hyeran, Kudrna, Dave, Itoh, Yuichiro, Agate, Robert J., Melamed, Esther, Goicoechea, José L., Talag, Jayson, Mueller, Christopher, Wang, Wenming, Currie, Jennifer, Sisneros, Nicholas B., Wing, Rod A. and Arnold, Arthur P. (2006) Utilization of a zebra finch BAC library to determine the structure of an avian androgen receptor genomic region. Genomics, 87 1: 181-190. doi:10.1016/j.ygeno.2005.09.005

Vroh Bi, I., McMullen, M. D., Sanchez-Villeda, H., Schroeder, S., Gardiner, J., Polacco, M., Soderlund, C., Wing, R., Fang, Z. and Coe Jr., E. H. (2006) Single nucleotide polymorphisms and insertion-deletions for genetic markers and anchoring the maize fingerprint contig physical map. Crop Science, 46 1: 12-21. doi:10.2135/cropsci2004.0706

Nelson, William M., Bharti, Arvind K., Butler, Ed, Wei, Fusheng, Fuks, Galina, Kim, HyeRan, Wing, Rod A., Messing, Joachim and Soderlund, Carol (2005) Whole-genome validation of high-information-content fingerprinting. Plant Physiology, 139 1: 27-38. doi:10.1104/pp.105.061978

Jantasuriyarat, Chatchawan, Gowda, Malali, Haller, Karl, Hatfield, Jamie, Lu, Guodong, Stahlberg, Eric, Zhou, Bo, Li, Huameng, Kim, HyRan, Yu, Yeisoo, Dean, Ralph A., Wing, Rod A., Soderlund, Carol and Wang, Guo-Liang (2005) Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Plant Physiology, 138 1: 105-115. doi:10.1104/pp.104.055624

Haberer, Georg, Young, Sarah, Bharti, Arvind K., Gundlach, Heidrun, Raymond, Christina, Fuks, Galina, Butler, Ed, Wing, Rod A., Rounsley, Steve, Birren, Bruce, Nusbaum, Chad, Mayer, Klaus F.X. and Messing, Joachim (2005) Structure and architecture of the maize genome. Plant Physiology, 139 4: 1612-1624. doi:10.1104/pp.105.068718

Ammiraju, Jetty S. S., Yu, Yeisoo, Luo, Meizhong, Kudrna, Dave, Kim, HyeRan, Goicoechea, Jose L., Katayose, Yuichi, Matsumoto, Takashi, Wu, Jianzhong, Sasaki, Takuji and Wing, Rod A. (2005) Random sheared fosmid library as a new genomic tool to accelerate complete finishing of rice (Oryza sativa spp. Nipponbare) genome sequence: sequencing of gap-specific fosmid clones uncovers new euchromatic portions of the genome. Theoretical and Applied Genetics, 111 8: 1596-1607. doi:10.1007/s00122-005-0091-3

Pratt, Lee H., Liang, Chun, Shah, Manish, Sun, Feng, Wang, Haiming, Reid, St. Patrick, Gingle, Alan R., Paterson, Andrew H., Wing, Rod, Dean, Ralph, Klein, Robert, Nguyen, Henry T., Ma, Hong-Mei, Zhao, Xin, Morishige, Daryl T., Mullet, John E. and Cordonnier-Pratt, Marie-Michèle (2005) Sorghum expressed sequence tags identify signature genes for drought, pathogenesis, and skotomorphogenesis from a milestone set of 16,801 unique transcripts. Plant Physiology, 139 2: 869-884. doi:10.1104/pp.105.066134

Choisne, Nathalie, Demange, Nadia, Orjeda, Gisela, Samain, Sylvie, D'Hont, Angélique, Cattolico, Laurence, Pelletier, Eric, Couloux, Arnaud, Segurens, Béatrice, Wincker, Patrick, Scarpelli, Claude, Weissenbach, Jean, Salanoubat, Marcel, Singh, Nagendra K., Mohapatra, Trilochan, Sharma, Tilak R., Gaikwad, Kishor, Singh, Archana, Dalal, Vivek, Srivastava, Subodh K., Dixit, Anupam, Pal, Ajit K., Ghazi, Irfan A., Yadav, Mahavir, Pandit, Awadhesh, Bhargava, Ashutosh, Sureshbabu, K., Dixit, Rekha, Singh, Harvinder, Swain, Suresh C., Pal, Sumita, Ragiba, M., Singh, Pradeep K., Singhal, Vibha, Mendiratta, Sangeeta D., Batra, Kamlesh, Raghuvanshi, Saurabh, Mohanty, Amitabh, Bharti, Arvind K., Gaur, Anupama, Gupta, Vikrant, Kumar, Dibyendu, Vydianathan, Ravi, Vij, Shuba, Kapur, Anita, Khurana, Parul, Sharma, Sulabha, Khurana, Paramjit, Khurana, Jitendra P., Tyagi, Akhilesh K., Yuan, Qiaoping, Ouyang, Shu, Liu, Jia, Zhu, Wei, Wang, Aihui, Lin, Haining, Hamilton, John, Haas, Brian, Wortman, Jennifer, Jones, Kristine M., Kim, Mary, Overton, Larry, Tsitrin, Tamara, Fadrosh, Douglas, Bera, Jayati, Weaver, Bruce, Jin, Shaohua, Johri, Shivani, Reardon, Matt, Vuong, Hue, Tallon, Luke, Van Aken, Susan, Lewis, Matthew, Utterback, Teresa, Feldblyum, Tamara, Zismann, Victoria, Iobst, Stacey, Hsiao, Joseph, de Vazeille, Aymeric R., Salzberg, Steven L., White, Owen, Fraser, Claire, Buell, C. Robin, Yu, Yeisoo, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Kim, Hye Ran, Stum, Diana, Wang, Wenming, Kudrna, Dave, Mueller, Christopher, Wing, Rod A., Kramer, Melissa, Spiegel, Lori, Nascimento, Lidia, Preston, Raymond, Zutavern, Theresa and Messing, Joachim (2005) The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biology, 3 . doi:10.1186/1741-7007-3-20

Buell, C. Robin, McCombie, W. Richard, Wing, Rod A., Yuan, Qiaoping, Ouyang, Shu, Liu, Jia, Zhu, Wei, Wang, Aihui, Maiti, Rama, Haas, Brian, Wortman, Jennifer, Pertea, Mihaela, Jones, Kristine M., Kim, Mary, Overton, Larry, Tsitrin, Tamara, Fadrosh, Douglas, Bera, Jayati, Weaver, Jayati, Jin, Shaohua, Johri, Shivani, Reardon, Matt, Webb, Kristen, Hill, Jessica, Moffat, Kelly, Tallon, Luke, Van Aken, Susan, Lewis, Matthew, Utterback, Teresa, Feldblyum, Tamara, Zismann, Victoria, Iobst, Stacey, Hsiao, Joseph, De Vazeille, Aymeric R., Salzberg, Steven L., White, Owen, Fraser, Claire, Yu, Yeisoo, Kim, HeyRan, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Kernodle-Thompson, Shelly, Wei, Fusheng, Kudrna, David, Ammiraju, Jetty Siva S., Luo, Meizhong, Goicoechea, Jos Luis, Henry, David, Oates, Ryan, Palmer, Michael, Pries, Gina, Saski, Christopher, Simmons, Jessica, Soderlund, Carol, Soderlund, Carol, Soderlund, Carol, Nelson, William, Soderlund, Carol, De La Bastide, Melissa, Spiegel, Lori, Nascimento, Lidia, Huang, Emily, Preston, Raymond, Zutavern, Theresa, Palmer, Lance, O'haughnessy, Andrew, Dike, Sujit, McCombie, W. Richard, Minx, Pat, Cordum, Holly, Wilson, Richard, Jin, Weiwei, Lee, Hye-Ran, Jiang, Jiming and Jackson, Scott (2005) Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. The Rice Chromosome 3 Sequencing Consortium. Genome Research, 15 9: 1284-1291. doi:10.1101/gr.3869505

Wing, Rod A., Ammiraju, Jetty S.S., Luo, Meizhong, Kim, HyeRan, Yu, Yeisoo, Kudrna, Dave, Goicoechea, Jose L., Wang, Wenming, Nelson, Will, Rao, Kiran, Brar, Darshan, Mackill, Dave J., Han, Bin, Soderlund, Cari, Stein, Lincoln, SanMiguel, Phillip and Jackson, Scott (2005) The Oryza map alignment project: The golden path to unlocking the genetic potential of wild rice species. Plant Molecular Biology, 59 1: 53-62. doi:10.1007/s11103-004-6237-x

Wing, Rod (2005) Plant Molecular Biology: Editorial. Plant Molecular Biology, 59 1: vii-vii. doi:10.1007/s11103-005-2196-0

Matsumoto, Takashi, Wu, Jianzhong, Kanamori, Hiroyuki, Katayose, Yuichi, Fujisawa, Masaki, Namiki, Nobukazu, Mizuno, Hiroshi, Yamamoto, Kimiko, Antonio, Baltazar A., Baba, Tomoya, Sakata, Katsumi, Nagamura, Yoshiaki, Aoki, Hiroyoshi, Arikawa, Koji, Arita, Kohei, Bito, Takahito, Chiden, Yoshino, Fujitsuka, Nahoko, Fukunaka, Rie, Hamada, Masao, Harada, Chizuko, Hayashi, Akiko, Hijishita, Saori, Honda, Mikiko, Hosokawa, Satomi, Ichikawa, Yoko, Idonuma, Atsuko, Iijima, Masumi, Ikeda, Michiko, Ikeno, Maiko, Ito, Kazue, Ito, Sachie, Ito, Tomoko, Ito, Yuichi, Ito, Yukiyo, Iwabuchi, Aki, Kamiya, Kozue, Karasawa, Wataru, Kurita, Kanako, Katagiri, Satoshi, Kikuta, Ari, Kobayashi, Harumi, Kobayashi, Noriko, MacHita, Kayo, Maehara, Tomoko, Masukawa, Masatoshi, Mizubayashi, Tatsumi, Mukai, Yoshiyuki, Nagasaki, Hideki, Nagata, Yuko, Naito, Shinji, Nakashima, Marina, Nakama, Yuko, Nakamichi, Yumi, Nakamura, Mari, Meguro, Ayano, Negishi, Manami, Ohta, Isamu, Ohta, Tomoya, Okamoto, Masako, Ono, Nozomi, Saji, Shoko, Sakaguchi, Miyuki, Sakai, Kumiko, Shibata, Michie, Shimokawa, Takanori, Song, Jianyu, Takazaki, Yuka, Terasawa, Kimihiro, Tsugane, Mika, Tsuji, Kumiko, Ueda, Shigenori, Waki, Kazunori, Yamagata, Harumi, Yamamoto, Mayu, Yamamoto, Shinichi, Yamane, Hiroko, Yoshiki, Shoji, Yoshihara, Rie, Yukawa, Kazuko, Zhong, Huisun, Yano, Masahiro, Sasaki, Takuji, Yuan, Qiaoping, Ouyang, Shu, Liu, Jia, Jones, Kristine M., Gansberger, Kristen, Moffat, Kelly, Hill, Jessica, Bera, Jayati, Fadrosh, Douglas, Jin, Shaohua, Johri, Shivani, Kim, Mary, Overton, Larry, Reardon, Matthew, Tsitrin, Tamara, Vuong, Hue, Weaver, Bruce, Ciecko, Anne, Tallon, Luke, Jackson, Jacqueline, Pai, Grace, Van Aken, Susan, Utterback, Terry, Reidmuller, Steve, Feldblyum, Tamara, Hsiao, Joseph, Zismann, Victoria, Iobst, Stacey, De Vazeille, Aymeric R., Buell, C. Robin, Ying, Kai, Li, Ying, Lu, Tingting, Huang, Yuchen, Zhao, Qiang, Feng, Qi, Zhang, Lei, Zhu, Jingjie, Weng, Qijun, Mu, Jie, Lu, Yiqi, Fan, Danlin, Liu, Yilei, Guan, Jianping, Zhang, Yujun, Yu, Shuliang, Liu, Xiaohui, Zhang, Yu, Hong, Guofan, Han, Bin, Choisne, Nathalie, Demange, Nadia, Orjeda, Gisela, Samain, Sylvie, Cattolico, Laurence, Pelletier, Eric, Couloux, Arnaud, Segurens, Beatrice, Wincker, Patrick, D'Hont, Angelique, Scarpelli, Claude, Weissenbach, Jean, Salanoubat, Marcel, Quetier, Francis, Yu, Yeisoo, Kim, Hye Ran, Rambo, Teri, Currie, Jennifer, Collura, Kristi, Luo, Meizhong, Yang, Tae-Jin, Ammiraju, Jetty S. S., Engler, Friedrich, Soderlund, Carol, Wing, Rod A., Palmer, Lance E., De La Bastide, Melissa, Spiegel, Lori, Nascimento, Lidia, Zutavern, Theresa, O'Shaughnessy, Andrew, Dike, Sujit, Dedhia, Neilay, Preston, Raymond, Balija, Vivekanand, McCombie, W. Richard, Chow, Teh-Yuan, Chen, Hong-Hwa, Chung, Mei-Chu, Chen, Ching-San, Shaw, Jei-Fu, Wu, Hong-Pang, Hsiao, Kwang-Jen, Chao, Ya-Ting, Chu, Mu-Kuei, Cheng, Chia-Hsiung, Hour, Ai-Ling, Lee, Pei-Fang, Lin, Shu-Jen, Lin, Yao-Cheng, Liou, John-Yu, Liu, Shu-Mei, Hsing, Yue-Ie, Raghuvanshi, S., Mohanty, A., Bharti, A. K., Gaur, A., Gupta, V., Kumar, D., Ravi, V., Vij, S., Kapur, A., Khurana, Parul, Khurana, Paramjit, Khurana, J. P., Tyagi, A. K., Gaikwad, K., Singh, A., Dalal, V., Srivastava, S., Dixit, A., Pal, A. K., Ghazi, I. A., Yadav, M., Pandit, A., Bhargava, A., Sureshbabu, K., Batra, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Messing, Joachim, Nelson, Amy Bronzino, Fuks, Galina, Kavchok, Steve, Keizer, Gladys, Llaca, Eric Linton Victor, Song, Rentao, Tanyolac, Bahattin, Young, Steve, Ho, Kim, Hahn, Jang Ho, Sangsakoo, G., Vanavichit, A., De Mattos, Luiz Anderson Teixeira, Zimmer, Paulo Dejalma, Malone, Gaspar, Dellagostin, Odir, De Oliveira, Antonio Costa, Bevan, Michael, Bancroft, Ian, Minx, Pat, Cordum, Holly, Wilson, Richard, Cheng, Zhukuan, Jin, Weiwei, Jiang, Jiming, Leong, Sally Ann, Iwama, Hisakazu, Gojobori, Takashi, Itoh, Takeshi, Niimura, Yoshihito, Fujii, Yasuyuki, Habara, Takuya, Sakai, Hiroaki, Sato, Yoshiharu, Wilson, Greg, Kumar, Kiran, McCouch, Susan, Juretic, Nikoleta, Hoen, Douglas, Wright, Stephen, Bruskiewich, Richard, Bureau, Thomas, Miyao, Akio, Hirochika, Hirohiko, Nishikawa, Tomotaro, Kadowaki, Koh-Ichi, Sugiura, Masahiro and Burr, Benjamin (2005) The map-based sequence of the rice genome. Nature, 436 7052: 793-800. doi:10.1038/nature03895

Yang, Tae-Jin, Yu, Yeisoo, Chang, Song-Bin, De Jong, Hans, Oh, Chang-Sik, Ahn, Sang-Nag, Fang, Eric and Wing, Rod A. (2005) Toward closing rice telomere gaps: Mapping and sequence characterization of rice subtelomere regions. Theoretical and Applied Genetics, 111 3: 467-478. doi:10.1007/s00122-005-2034-4

Yang, Tae-Jin, Lee, Seunghee, Chang, Song-Bin, Yu, Yeisoo, de Jong, Hans and Wing, Rod A. (2005) In-depth sequence analysis of the tomato chromosome 12 centromeric region: Identification of a large CAA block and characterization of pericentromere retrotranposons. Chromosoma, 114 2: 103-117. doi:10.1007/s00412-005-0342-8

Wang, Wenming, Tanurdzic, Milos, Luo, Meizhong, Sisneros, Nicholas, Kim, Hye Ran, Weng, Jing-Ke, Kudrna, Dave, Mueller, Christopher, Arumuganathan, K., Carlson, John, Chapple, Clint, de Pamphilis, Claude, Mandoli, Dina, Tomkins, Jeff, Wing, Rod A. and Banks, Jo Ann (2005) Construction of a bacterial artificial chromosome library from the spikemoss Selaginella moellendorffii: a new resource for plant comparative genomics. BMC Plant Biology, 5 10.1-10.8. doi:10.1186/1471-2229-5-10

Horn, Renate, Lecouls, Anne-Claire, Callahan, Ann, Dandekar, Abhaya, Garay, Lilibeth, McCord, Per, Howad, Werner, Chan, Helen, Verde, Ignazio, Main, Doreen, Jung, Sook, Georgi, Laura, Forrest, Sam, Mook, Jennifer, Zhebentyayeva, Tatyana, Yu, Yeisoo, Hye, Ran Kim, Jesudurai, Christopher, Sosinski, Bryon, Arús, Pere, Baird, Vance, Parfitt, Dan, Reighard, Gregory, Scorza, Ralph, Tomkins, Jeffrey, Wing, Rod and Abbott, Albert Glenn (2005) Candidate gene database and transcript map for peach, a model species for fruit trees. Theoretical and Applied Genetics, 110 8: 1419-1428. doi:10.1007/s00122-005-1968-x

Adema, Coen M., Luo, Mei-Zhong, Hanelt, Ben, Hertel, Lynn A., Marshall, Jennifer J., Zhang, Si-Ming, DeJong, Randall J., Kim, Hye-Ran, Kudrna, David, Wing, Rod A., Soderlund, Cari, Knight, Matty, Lewis, Fred A., Caldeira, Roberta Lima, Jannotti-Passos, Liana K., Carvalho, Omar Dos Santos and Loker, Eric S. (2006). A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate snail host of Schistosoma mansoni. In: , , (167-177). . doi:10.1590/S0074-02762006000900027

Professor Rod Wing

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